Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D06
         (303 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    30   1.5  
AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens ...    28   4.7  

>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -3

Query: 280 VFSTVRVFGSNFTDS*GHVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVWHRVLG 101
           VF+   V+ S FT +  HV    ICV  ++ I VY+ I + I +C Y  + +  +     
Sbjct: 156 VFTCTHVYISVFTCT--HVY---ICVFIYICIHVYIHIYICIHICVYSYIHMYTYIHTYT 210

Query: 100 RECTALLYNNI 68
              T L +N++
Sbjct: 211 YTYTQLFFNHL 221


>AK128083-1|BAC87264.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46204 fis, clone TESTI4009501. ).
          Length = 225

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 144 LHTSILSVIPMYTDISTKQRTHIYLHT----TCPYESVKFEPNTRTVLKTNDNSNS 299
           +HT IL++  M+T   T   TH + HT    T  +       +TRT+  T+ +++S
Sbjct: 105 MHTRILTLSHMHTHAHTHAHTHGHTHTRAHSTHAHTHAHSHYHTRTLTLTHSHAHS 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,982,369
Number of Sequences: 237096
Number of extensions: 748153
Number of successful extensions: 1264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)