Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D06
(303 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 28 1.1
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 28 1.1
Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical pr... 27 2.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 3.4
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 3.4
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 3.4
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 3.4
U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of m... 26 4.5
U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein. 26 4.5
AC006655-4|AAF39877.2| 292|Caenorhabditis elegans Hypothetical ... 25 7.9
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
protein K04G2.8b protein.
Length = 1188
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 93 HSRPXTRCQTDSNNIR*LHTSILSVIPMYTDISTKQR 203
H R D N +R LH I ++I +D++ K+R
Sbjct: 80 HKRDIVPTDEDDNKLRELHEKIFALITSESDVNRKRR 116
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
protein K04G2.8a protein.
Length = 1186
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 93 HSRPXTRCQTDSNNIR*LHTSILSVIPMYTDISTKQR 203
H R D N +R LH I ++I +D++ K+R
Sbjct: 80 HKRDIVPTDEDDNKLRELHEKIFALITSESDVNRKRR 116
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 93 HSRPXTRCQTDSNNIR*LHTSILSVIPMYTDISTKQR 203
H R D N +R LH I ++I +D++ K+R
Sbjct: 80 HKRDIVPTDEDDNKLRELHEKIFALITSESDVNRKRR 116
>Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical
protein C49F5.2 protein.
Length = 708
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 109 HGARPIAITLDNYIHQF*A*SPCTRISVRNNGHIFTYTQHVP 234
HG I LD Y + +P TRI + ++ H+ T +P
Sbjct: 274 HGEEEIPEELDRYFEKLIYVAPRTRIRITDDIHLSNDTHRIP 315
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 183 DISTKQRTHIYLHTTCPYESVKFEPNT 263
D++ K+RTHI H T Y + P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 183 DISTKQRTHIYLHTTCPYESVKFEPNT 263
D++ K+RTHI H T Y + P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 183 DISTKQRTHIYLHTTCPYESVKFEPNT 263
D++ K+RTHI H T Y + P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 183 DISTKQRTHIYLHTTCPYESVKFEPNT 263
D++ K+RTHI H T Y + P T
Sbjct: 2266 DVNDKKRTHIVNHPTLTYLFEELNPET 2292
>U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of mes
(in same operon)protein 3 protein.
Length = 393
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 152 INSERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 268
I RNP Q + Y + ++ L++G++RAK H
Sbjct: 49 IYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87
>U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein.
Length = 393
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 152 INSERNPHVHGYQYETTDTYLLTHNMSLRIGKIRAKHTH 268
I RNP Q + Y + ++ L++G++RAK H
Sbjct: 49 IYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87
>AC006655-4|AAF39877.2| 292|Caenorhabditis elegans Hypothetical
protein H10D18.5 protein.
Length = 292
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 175 CTRISVRNNGHIFTYTQH 228
C R+ VRN GHI Y H
Sbjct: 188 CERLRVRNCGHIALYQVH 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,805,525
Number of Sequences: 27780
Number of extensions: 127391
Number of successful extensions: 321
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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