Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D06
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   2.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   2.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   2.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   2.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   7.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   7.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 25  NHNHNHPKH 51
           NHNHN  +H
Sbjct: 426 NHNHNQARH 434


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
 Frame = +1

Query: 55  GSSXECYCTVKLYI---HVPXH 111
           G S ECYC  + Y+   H+  H
Sbjct: 86  GFSKECYCCRESYLKERHITLH 107


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 118 WHRVLGRECTALLYNNIRXRSPNVLDDCDCDW 23
           W RVLGR    +  N  R    +  +  + DW
Sbjct: 390 WSRVLGRVHATIERNEKRLAEQDRRERMEFDW 421


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
 Frame = +1

Query: 55  GSSXECYCTVKLYI---HVPXH 111
           G S ECYC  + Y+   H+  H
Sbjct: 86  GFSKECYCCRESYLKERHITLH 107


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 186 ISTKQRTHIYLHTTCPYES 242
           I +   T++ L T CPY S
Sbjct: 621 IPSLNSTNVTLSTKCPYPS 639


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 123 RSGTVXWDVNVQL 85
           R+G   WD N +L
Sbjct: 318 RNGIACWDTNTEL 330


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 189 STKQRTHIYLHTTCPY 236
           S + RTH + HT+  Y
Sbjct: 216 SLRNRTHDFQHTSSRY 231


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 189 STKQRTHIYLHTTCPY 236
           S + RTH + HT+  Y
Sbjct: 216 SLRSRTHDFQHTSSRY 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,548
Number of Sequences: 438
Number of extensions: 1812
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)