Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D06
         (303 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase fa...    26   4.2  
At3g48200.1 68416.m05259 expressed protein                             26   4.2  
At3g47420.1 68416.m05156 glycerol-3-phosphate transporter, putat...    26   5.6  
At1g65730.1 68414.m07460 oligopeptide transporter OPT family pro...    26   5.6  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    26   5.6  
At5g03555.1 68418.m00313 permease, cytosine/purines, uracil, thi...    25   7.4  
At3g62040.1 68416.m06969 haloacid dehalogenase-like hydrolase fa...    25   7.4  
At5g35753.1 68418.m04282 expressed protein                             25   9.7  

>At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 266

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 207 HIYLHTTCPYESVKFEPNTRTVL 275
           H Y+H   PYE++K +P  R++L
Sbjct: 83  HRYVHGRLPYENLKPDPVLRSLL 105


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 210 IYLHTTCPYESVKFEPNTRTVLKTNDNS 293
           + L T  P + +K    TRTV  TNDN+
Sbjct: 236 VNLRTHVPEKLLKLNNQTRTVQATNDNN 263


>At3g47420.1 68416.m05156 glycerol-3-phosphate transporter, putative
           / glycerol 3-phosphate permease, putative similar to
           cAMP inducible 2 protein [Mus musculus] GI:4580997,
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 523

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 278 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDIRVHGDYA 162
           F +C+   L FYR  G   +  N   +F T + V+G YA
Sbjct: 378 FMYCSIPALFFYRSYGHVSLLANASLMFLTGMLVNGPYA 416


>At1g65730.1 68414.m07460 oligopeptide transporter OPT family
           protein similar to iron-phytosiderophore transporter
           protein yellow stripe 1 [Zea mays] GI:10770865; contains
           Pfam profile PF03169: OPT oligopeptide transporter
           protein
          Length = 688

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 295 LLLSFVFSTVRVFGSNFTDS*GHVVCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSVW 116
           L+L ++F    V  +   D+ G    + I +   + I  Y+G    ID+C    L+L +W
Sbjct: 568 LMLCYIFFAAAVIVNGIRDALGPKWARFIPLPMAMAIPFYLGGYFTIDMC-LGSLILFIW 626

Query: 115 HRV 107
            ++
Sbjct: 627 RKL 629


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 223 VCK*ICVRCFVLISVYMGITLRIDVCNYLMLLLSV 119
           +C  IC++C   I +Y       DVCN+L L L V
Sbjct: 57  LCCSICLQCVRYILIY---PQGCDVCNHLSLFLCV 88


>At5g03555.1 68418.m00313 permease, cytosine/purines, uracil,
           thiamine, allantoin family protein contains Pfam
           PF02133: permease, cytosine/purines, uracil, thiamine,
           allantoin family
          Length = 599

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 16  YLSNHNHNHPKH*GSSXECYCTVKLYIHV 102
           +L+ H H H +H  SS       KLY HV
Sbjct: 11  HLNLHPHKHNRHSLSSLRSRTKAKLYQHV 39


>At3g62040.1 68416.m06969 haloacid dehalogenase-like hydrolase
           family protein similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 227

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 207 HIYLHTTCPYESVKFEPNTRTVL 275
           H Y+H   PYE +K +P  R +L
Sbjct: 58  HEYVHGRLPYEKLKPDPLLRNLL 80


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 179 HGYQYETTDTYLLTHNMSLRIGKIRAKHTHSAKN 280
           HGY+Y T ++Y  +  +    G + +    SA N
Sbjct: 178 HGYEYVTNESYDWSSYVGTSPGNLESNRMSSASN 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,139,458
Number of Sequences: 28952
Number of extensions: 107078
Number of successful extensions: 245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)