Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D04
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    29   0.73 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.9  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.1  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   6.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.0  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 746 PSVTPAPPQQFVTVVPAQQMGP 681
           P   P P  Q+VT++PA+++GP
Sbjct: 280 PDHIPGPDAQWVTILPARKLGP 301


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 202 LSVLIVNKFNMLRNLHYF*WKTIFVIFFKEQT 107
           LS L VN+F  ++N+    W T   IFF E+T
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFIEET 196


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
 Frame = -3

Query: 758 YPAVPSVTPAPPQQFVTVVPAQQMGPE------PTNTSCPSCSAAIVTR-------VDHV 618
           YP V   TP P   ++ V+P     P+      PT+  CP C   +  R       +++ 
Sbjct: 630 YPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILENQ 689

Query: 617 PVTKTHLFALLLC--LIGC----CPCACIP--YCTDSCK 525
           P  + ++    LC  L+ C    C   C P   C  SCK
Sbjct: 690 PCYRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCK 728


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 298 KLCFYMYPQTHLDLFVLQGKKRYLF 372
           KLC Y+Y   HLD  V   K  YLF
Sbjct: 191 KLCIYLYEARHLDQ-VWDEKSTYLF 214


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 755 PAV-PSVTPAPPQQFVTVVPAQQMGPEPTNTS-CPSCSAAIVTRVD 624
           PA+ P VTPAPP    T        P P  +S  PS   A +T  +
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHAN 766


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 752 AVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSC 651
           A PSV+P P QQ        +    PTN +  SC
Sbjct: 533 AKPSVSPMPLQQSTGKTEVAKRAQFPTNVNYSSC 566


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 IAFYLEEQIGLNVFEDTYKNRVLFYSIMYKFS 269
           I F+L     + + E  Y+N+ +FYS++  F+
Sbjct: 453 IPFFLPSDKLIMLVESEYRNKHIFYSLLNSFT 484


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  NVIKKYTKMQLTGVIFKYLKLQSV 84
           N++K  TK+ L   +F  LKLQ +
Sbjct: 514 NIVKILTKLPLLSTVFVKLKLQGI 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,381
Number of Sequences: 5004
Number of extensions: 65132
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)