Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D04
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0313 + 2216498-2216953 32 0.58
02_03_0221 - 16554910-16555560 29 3.1
07_03_0600 + 19866757-19867218,19867920-19868429 29 4.1
04_04_0138 + 23067885-23068245,23068393-23068634 29 4.1
07_01_0310 + 2209084-2209554 29 5.4
03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085 29 5.4
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 28 7.1
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 28 7.1
07_01_0312 + 2214050-2214556 28 9.4
06_03_0854 + 25400855-25403741,25406174-25407708 28 9.4
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 9.4
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 9.4
>07_01_0313 + 2216498-2216953
Length = 151
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 615
PAVP VT PP + VPA M P P + P+ + + V VP
Sbjct: 67 PAVPKVT-LPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVP 112
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 593 ALLLCLIGCCPCACIPYC-TDSCKDA 519
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 657
P P P PPQQF +P QQ P P + + P
Sbjct: 76 PPPPQYAPPPPQQF--QLPHQQYAPPPQHYAPP 106
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 743 SVTPAPPQQF-VTVVPAQQMGPEP-TNTSCPSCSAAIVTRVDHVPV 612
S P+ P VT P QQM P P T++ P S+ + D VPV
Sbjct: 142 STAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSSGLKLIADCVPV 187
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 648
PAVP+VT PP + +PA + P P + P+ +
Sbjct: 23 PAVPAVT-LPPMPAIPAIPAATLPPIPAVPTVPNAA 57
>03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085
Length = 252
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMG----PEPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL 588
P PS P P QQ T P QQ P+ P+ +A+ D V + T F +
Sbjct: 28 PRPPSAQPPPEQQPPTPTPTQQQSMQAQPQARPRRAPAAAASGADSTDWVATSLTRRFGI 87
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 654
PA S TP+ Q PA + PEP + PS
Sbjct: 548 PAAGSSTPSSSQAMTAAAPAPPLPPEPPSPRHPS 581
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 476 NR*IFQLVQ*IINCKNNILVLLFNSILSYELSI 378
NR +F VQ + CK N + L+ IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659
>07_01_0312 + 2214050-2214556
Length = 168
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 648
P VP+VT PP + VPA + P P + P+ +
Sbjct: 43 PTVPAVT-LPPMPAIPAVPAATLPPMPAVPTVPNAA 77
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 749 VPSVTPAPPQQFVTVVPAQQMGPEPTNT 666
VP PAPP V +VP P PT++
Sbjct: 299 VPVQVPAPPSSDVALVPVPVQVPAPTSS 326
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 566 NNLLGKEAKQTGGF*SLARDLLW*RLPHCMKGS 664
++L E + GG SL+R +L +P C+KGS
Sbjct: 171 DSLHDDELSRNGGILSLSRSILKLGVPECLKGS 203
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGP 681
PA P+ +P PP V PAQQ P
Sbjct: 93 PAAPASSPHPPPPSAPVAPAQQGEP 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,814,912
Number of Sequences: 37544
Number of extensions: 388289
Number of successful extensions: 1292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -