Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D04
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   3.4  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   5.9  
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa...    28   7.8  
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    28   7.8  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
 Frame = -3

Query: 755 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSC-PSCSAAIVTRVDHVPVTKTHL------ 597
           P V   T  PP Q  T  P       PT     P     + TR+D VP+  T        
Sbjct: 171 PPVKPPTTTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVPLCGTRCGQHSRK 230

Query: 596 -FALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNA 492
              +  C+  C  C C+P  T   K+    C +C A
Sbjct: 231 NVCMRACVTCCYRCKCVPPGTYGNKEK---CGSCYA 263


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 542 CTDSCKDANHYCPNCNAYIGSYNR*IFQLV 453
           C+  C + ++ CP C+  IG+Y   I + V
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYRSRIMERV 106


>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P31384 Glucose-repressible
           alcohol dehydrogenase transcriptional effector (Carbon
           catabolite repressor protein 4) {Saccharomyces
           cerevisiae}; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 602

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 326 HI*TYLFFKVKSDIYLVLCSVHSSK 400
           H   Y +F+V+SD  + +CSVH S+
Sbjct: 47  HFLKYRWFRVQSDKKVAICSVHPSE 71


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 542 CTDSCKDANHYCPNCNAYIGSYNR*IFQLV--Q*IINCKN 429
           C+  CK   + CP C+  IG +   I + +    +++C N
Sbjct: 70  CSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPN 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,327
Number of Sequences: 28952
Number of extensions: 324168
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)