Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D03
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    25   2.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   2.6  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   3.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    24   4.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   4.6  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    24   6.1  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    23   8.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    23   8.1  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    23   8.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    23   8.1  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    23   8.1  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    23   8.1  
SPAC664.08c |||traub transciption factor family protein |Schizos...    23   8.1  

>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 129 RKIGVQKTLMMKMYRFGKTXWED 61
           RK G +   ++++YR G T W++
Sbjct: 209 RKAGRETLSILRIYRIGNTIWDE 231


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 88  IHLHHQRLLYPNFPQEILR 144
           +H +HQRLL  +FPQ+  R
Sbjct: 134 LHKNHQRLLGMSFPQDGFR 152


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 64  FPXCLPKPIHLHHQRLLYPNFPQEI 138
           F    P P  + H R++ PN P+EI
Sbjct: 18  FRPSTPPPKEVLHTRVIVPNGPEEI 42


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 76  LPKPIHLHHQRLLYPN 123
           L + IH HH+RLL+PN
Sbjct: 70  LAREIH-HHRRLLHPN 84


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 92  IFIISVFCTPIFRRKFFELVILF*QT---KVYFLFVSHYTVMIIEIR 223
           +F+++V   P  RRKFFE   +   T    + FL   H+   I+ ++
Sbjct: 195 LFLMTVASLPSVRRKFFEWFFVLHHTCSVLIIFLIWLHHPRTIVYMK 241


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 88  IHLHHQRLLYPNFPQEILRTRHP 156
           + +HHQ +      QE L TR+P
Sbjct: 193 LSIHHQHIQAHEMAQESLETRNP 215


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 50  WMTSSSQXVFPNRYIFIISVFCTPIFRRKF 139
           W     + V  NR +  IS+F  PIF RKF
Sbjct: 38  WSPYKKKHVLVNR-LKHISLFPKPIFARKF 66


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 89  YIFIISVFCTPIF 127
           Y+FI+ +F TPIF
Sbjct: 95  YMFILGMFVTPIF 107


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 IIAGYIRCKSQHNCHVKCKFTTI 303
           I AGY      H  H+ CKF  +
Sbjct: 351 ISAGYSPVLDCHTAHIACKFAEL 373


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 112 LYPNFPQEILRTRHPLL 162
           LYPNFP ++   + P L
Sbjct: 79  LYPNFPAQLKENKKPKL 95


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 IIAGYIRCKSQHNCHVKCKFTTI 303
           I AGY      H  H+ CKF  +
Sbjct: 351 ISAGYSPVLDCHTAHIACKFAEL 373


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 235 IIAGYIRCKSQHNCHVKCKFTTI 303
           I AGY      H  H+ CKF  +
Sbjct: 351 ISAGYSPVLDCHTAHIACKFAEL 373


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 75  TXWEDDVIQDDFNQQLRQQLEKXE 4
           T W D+  +D F+  L QQL+  E
Sbjct: 401 TVWPDEQTEDLFSSLLGQQLDLSE 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,613
Number of Sequences: 5004
Number of extensions: 18402
Number of successful extensions: 58
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)