Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D03
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1186 - 9440805-9440938,9442890-9442986                           32   0.11 
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024     31   0.14 
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148...    28   1.3  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   1.3  
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195...    27   2.3  
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726...    25   9.5  

>01_01_1186 - 9440805-9440938,9442890-9442986
          Length = 76

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLEK 10
           W+DD + DDF+ QLR++LE+
Sbjct: 51  WDDDDVNDDFSLQLRKELEE 70


>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
          Length = 120

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLE 13
           W+DD + DDF+ QLR++LE
Sbjct: 96  WDDDDVNDDFSLQLRKELE 114


>03_01_0184 -
           1479520-1479649,1479889-1479938,1480519-1480683,
           1481287-1481339,1481805-1481934,1482189-1482266,
           1482583-1482642,1483428-1483480,1483574-1483895
          Length = 346

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 79  PKPIHLHHQRLLYPNFPQEILRTRHPLLANQGLLSVCQPLYC 204
           P+ +H H +R   P   Q    TR  LL  +G  S  +PLYC
Sbjct: 11  PRLLHRHRRREAKP---QRRSATRVSLLPRRGAASARRPLYC 49


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 76  LPKPIHLHHQRLLYPNFPQEILRTRHPLLANQGL----LSVCQPLYC 204
           L +P HLHH R L   + Q ++R    +     L    LS C PL C
Sbjct: 590 LIQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRC 636


>03_01_0251 -
           1956985-1957058,1957238-1957361,1957646-1957744,
           1957821-1957919,1958097-1958195,1958306-1958404,
           1958744-1958820,1959232-1959952
          Length = 463

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 76  LPKPIHLHHQRLLYPNFPQEILRTRHPLLANQGL 177
           +P  + LHH  LL+P FP  + +T +PL A+  L
Sbjct: 1   MPPSLSLHHHLLLFP-FPSHV-QTLNPLSASPRL 32


>07_01_0874 -
           7261191-7261274,7262291-7262440,7262769-7262916,
           7263136-7263259,7263452-7263653,7263743-7263848,
           7263979-7264442
          Length = 425

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +1

Query: 223 EISLIIAGYIRCKSQHNCHVKCKF 294
           E+S+++   + C+S ++ H+ CK+
Sbjct: 134 EVSMLLRDDLVCRSINHSHINCKY 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,699,792
Number of Sequences: 37544
Number of extensions: 110504
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)