Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D03
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)              28   1.8  
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)              28   1.8  
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)                  26   5.4  
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)             26   5.4  
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)                   25   9.5  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    25   9.5  

>SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)
          Length = 582

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 100 DEDVSVWEDXLGRRRHPR 47
           D+++ VW D LG + HPR
Sbjct: 169 DDEIVVWSDFLGTQLHPR 186


>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
          Length = 582

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 100 DEDVSVWEDXLGRRRHPR 47
           D+++ VW D LG + HPR
Sbjct: 169 DDEIVVWSDFLGTQLHPR 186


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 127 PQEILRTRHPLLANQGLLSVCQPLY 201
           P ++LR  HPLLA      VC   Y
Sbjct: 195 PVDVLREGHPLLARGSTCGVCLSAY 219


>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
          Length = 461

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 130 QEILRTRHP-LLANQGLLSVCQPLYCD 207
           +E +R R   +L N  L SVCQPL+CD
Sbjct: 385 RESMRARSSDILGN--LKSVCQPLFCD 409


>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
          Length = 370

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 112 LYPNFPQEILRTRHPLLANQGLLSVCQPLYCDD 210
           L+P+        RHPLLAN+       P  C D
Sbjct: 316 LFPHSSGSSNYCRHPLLANKSRAETRNPFSCQD 348


>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
          Length = 560

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 118 GTEDADDEDVSVWED 74
           G +DADDED+++ +D
Sbjct: 397 GDDDADDEDINIGDD 411


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 185 TESRPWFARRG*RVRRIS 132
           T+++PWF+RR  R RR S
Sbjct: 198 TDAKPWFSRRRRRRRRSS 215


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 136 ILRTRHPLLANQGLLSVCQPL 198
           I  +R+P+L N+GLLSV + L
Sbjct: 119 IQTSRNPILKNEGLLSVTKTL 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,170,889
Number of Sequences: 59808
Number of extensions: 140956
Number of successful extensions: 306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)