Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D03
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   2.1  
AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical ...    26   6.4  

>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 173 VYFLFVSHYTVMIIEIRKYHLL 238
           VY LFV  Y+++  E+RKYH L
Sbjct: 63  VYLLFVIAYSLIPEELRKYHNL 84


>AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical
           protein Y119D3B.15 protein.
          Length = 82

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 133 PAENWGTE-DADDEDVSVWEDXLGRRRH 53
           P + W    + +++DV+VWED      H
Sbjct: 35  PVQEWAERAEGEEDDVNVWEDNWDDETH 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,125,353
Number of Sequences: 27780
Number of extensions: 106639
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)