Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D03
         (313 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ...    33   0.053
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ...    33   0.053
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ...    31   0.12 
At4g28410.1 68417.m04067 aminotransferase-related similar to nic...    27   2.0  
At5g20930.1 68418.m02486 protein kinase, putative nearly identic...    27   2.6  
At1g51900.1 68414.m05850 hypothetical protein                          27   3.5  
At5g47900.1 68418.m05917 hypothetical protein                          26   4.6  
At3g52910.1 68416.m05831 expressed protein nearly identical to t...    26   6.1  
At1g77855.1 68414.m09073 hypothetical protein                          26   6.1  

>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
           profile PF05160: DSS1/SEM1 family
          Length = 74

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLE 13
           W+DD + DDF++QLR++LE
Sbjct: 50  WDDDDVNDDFSRQLRKELE 68



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLEK 10
           WEDD   DD N    +QL K
Sbjct: 46  WEDDWDDDDVNDDFSRQLRK 65


>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
           profile PF05160: DSS1/SEM1 family
          Length = 74

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLE 13
           W+DD + DDF++QLR++LE
Sbjct: 50  WDDDDVNDDFSRQLRKELE 68



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLEK 10
           WEDD   DD N    +QL K
Sbjct: 46  WEDDWDDDDVNDDFSRQLRK 65


>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
           profile PF05160: DSS1/SEM1 family
          Length = 73

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLE 13
           W+DD + DDF++QL+++LE
Sbjct: 49  WDDDDVSDDFSRQLKKELE 67


>At4g28410.1 68417.m04067 aminotransferase-related similar to
           nicotianamine aminotransferase [Hordeum vulgare subsp.
           vulgare] GI:6469090
          Length = 447

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 167 TKVYFLFVSHYTVMIIEIRKYHLL 238
           T +Y L+ SH    ++EIRKY+LL
Sbjct: 164 TLIYPLYNSHAIHSLVEIRKYNLL 187


>At5g20930.1 68418.m02486 protein kinase, putative nearly identical
           to protein kinase tousled gi|433052|gb|AAA32874
          Length = 688

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 69  WEDDVIQDDFNQQLRQQLEKXE 4
           WED  +  D N QLRQ LE  E
Sbjct: 297 WEDGQMLKDLNAQLRQLLETKE 318


>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 6/24 (25%), Positives = 19/24 (79%)
 Frame = -2

Query: 96  KMYRFGKTXWEDDVIQDDFNQQLR 25
           ++Y+F  T +E+++++DD+ + ++
Sbjct: 298 EVYKFSLTDFEEEIMEDDYREDMK 321


>At5g47900.1 68418.m05917 hypothetical protein 
          Length = 384

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 157 LLANQGLLSVCQPLYCDDY*NKEISLIIAGYIRCKSQHN 273
           L   +GL  +C+P+  +    KEI  + A  +R +S HN
Sbjct: 47  LSLQRGLSLICRPIKRES--KKEIKSLRANQVRIRSNHN 83


>At3g52910.1 68416.m05831 expressed protein nearly identical to
           transcription activator GRL4 [Arabidopsis thaliana]
           GI:21539886 (unpublished)
          Length = 548

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 82  KPIHLHHQRLLYPNFPQEILRTRHPLLANQG 174
           +P+HL HQ+       QE    + P  AN G
Sbjct: 233 QPLHLSHQQSCSSEMKQESNNNKRPYEANSG 263


>At1g77855.1 68414.m09073 hypothetical protein
          Length = 317

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 91  HLHHQRLLYPNFPQEILR 144
           H HH+RLL P   ++++R
Sbjct: 109 HYHHRRLLSPQISRQVIR 126



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 132 LRKIGVQKTLMMKMYRFGKTXWED 61
           + +IGV+K +MM  YR  KT  E+
Sbjct: 225 MERIGVRKGMMMYEYRRSKTAMEE 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,622,871
Number of Sequences: 28952
Number of extensions: 93710
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)