Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D02
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 99 6e-22
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce... 33 0.056
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 32 0.074
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 3.7
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 6.4
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.4
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 26 6.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.5
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 25 8.5
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 99.1 bits (236), Expect = 6e-22
Identities = 56/137 (40%), Positives = 81/137 (59%), Gaps = 10/137 (7%)
Frame = -2
Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 555
+ DLDPL++ P+L LS + NPVA K +YR Y+ +++P L +LDF ++++ ER A +F
Sbjct: 102 IADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLRAEEVF 161
Query: 554 -KSRKGKEIQREI-AKKAKTF--------VPGGNMPDPKVTNLTPQEIHKIREAIKNASS 405
+ + EI I K++ F P N P LTP+E KI+EAIKNASS
Sbjct: 162 GQIQNPTEIASSIMGVKSRVFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNASS 221
Query: 404 LQEVERLTRMLQSGQIP 354
+ E+ RL ML G+IP
Sbjct: 222 IAEINRLEAMLLEGKIP 238
>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 461 NLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP 354
N+ P E H IR+ + + +++ E L + L+S QIP
Sbjct: 20 NVGPDEDHNIRDPVLTSEGIEQCEALAKELESKQIP 55
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 32.3 bits (70), Expect = 0.074
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Frame = -2
Query: 734 LGDLDPLST---LPKLRTLSLMHNPV----ANK-NHYRAYVAFKMPELRLLDFRKIKQK 582
L DLDP S LP+L+ L L+ NP+ AN+ Y+ + + P+LRLLD I +
Sbjct: 255 LSDLDPWSPKTKLPELQELVLVGNPIVTTFANRAMDYQREMVSRFPKLRLLDGNSINSE 313
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 555
L D D L ++ + + + P V +++PE+ +K +++++D+ A
Sbjct: 21 LDDFDGFMGLEEIEGVDIKYQPKGAMKE----VIYELPEVHEKKDKKPEKRKKDQKEASE 76
Query: 554 KSRKGK 537
K +KGK
Sbjct: 77 KKKKGK 82
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 423 NQECIIPTGGRTSDQNVAVWSDSRTKTFTACDT 325
+Q I+ +GG T+D+ + +W+ R DT
Sbjct: 427 HQRGILASGGGTADRTIKLWNTQRGSMLHNIDT 459
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 263 TTVRLLDPCPFPHLHLVDHLF 325
T V+L D CP L +DHLF
Sbjct: 183 TMVKLQDRCPSTSLKDIDHLF 203
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 147 AERKLETTKLG*EDRYYTSLQKNRYN 70
AER +T LG D + SL+K+ YN
Sbjct: 303 AERLEDTLDLGYSDTFLLSLKKSHYN 328
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = -2
Query: 704 PKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIK--QKERDEANALFKSRKGKEI 531
PKLR + R Y P++ +D IK ++ER + K + +
Sbjct: 321 PKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRL 380
Query: 530 QREIAKKAK 504
Q E KK K
Sbjct: 381 QEEERKKKK 389
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 434 IREAIKNASSLQEVERLTRML 372
IRE I +SLQEVE +T+ L
Sbjct: 139 IRERIDQVASLQEVESVTQAL 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,156
Number of Sequences: 5004
Number of extensions: 54115
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -