Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D02
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0190 - 7630282-7630287,7630383-7630547,7630641-7630691,763... 105 3e-23
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 33 0.18
04_04_0663 + 27058470-27059033,27059355-27059972 31 0.72
01_06_1071 - 34289609-34292941 30 1.7
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 29 3.8
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164... 29 5.1
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712... 28 6.7
>02_02_0190 -
7630282-7630287,7630383-7630547,7630641-7630691,
7630955-7631128,7631882-7632116,7632224-7632306,
7633826-7633866,7633986-7634067
Length = 278
Score = 105 bits (253), Expect = 3e-23
Identities = 60/138 (43%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Frame = -2
Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 555
L ++DPL++LPKL+ LSL+ N V + YR YV K+ LRLLDF+K+KQ+ER A F
Sbjct: 97 LAEIDPLASLPKLQFLSLLDNTVTKQPDYRLYVIHKLKHLRLLDFKKVKQQERIAAAQKF 156
Query: 554 KSRKGKEIQREIAKKAKTFVPG-------GNMPD--PKVTNLTPQEIHKIREAIKNASSL 402
S++ +E +++ AKTF PG M + PKV TP++I I+ AI N+ +L
Sbjct: 157 HSKEAEEEAKKV--PAKTFTPGQVVDAQDTTMEEQGPKVVAPTPEQITAIKAAIVNSQTL 214
Query: 401 QEVERLTRMLQSGQIPGQ 348
+EV RL + L +GQIP +
Sbjct: 215 EEVARLEKALSTGQIPAE 232
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 728 DLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDE 570
DL+ LS L LR L+L NP+A K+ V +P LR+ + + ++ + +
Sbjct: 217 DLEVLSELHYLRNLNLQGNPIAEKDGLAKKVKKLVPNLRIFNSKPMEASSKSK 269
>04_04_0663 + 27058470-27059033,27059355-27059972
Length = 393
Score = 31.5 bits (68), Expect = 0.72
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = -2
Query: 542 GKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQE--IHKIREAIKNASSLQEVERLTRMLQ 369
GKEIQR + K GN P K T PQ +I ++++N S Q + + T+ LQ
Sbjct: 82 GKEIQRNVGNVEKENPQVGNAPVDKSTQEVPQNQLPTQIPQSVQNQLSTQ-IPQSTQTLQ 140
Query: 368 SGQ----IPGQKPLQP 333
+ Q I Q+ +QP
Sbjct: 141 TTQNLPSIQTQQLIQP 156
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = -2
Query: 722 DPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRK 543
+PL KLRTL+++H + + + K+ LR+LD KE E+ K +
Sbjct: 534 NPLYGFRKLRTLTIIHGYKSRMSQLPHGLFMKLEYLRVLDMHGQGLKELPESIGNLKQLR 593
Query: 542 GKEI-QREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRML 372
++ EI + V N+ K+++ + ++ + I +L+ +E TR+L
Sbjct: 594 FLDLSSTEIETLPASLVKLYNLQILKLSDC--NFLREVPQGITRLINLRHLEASTRLL 649
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 542 GKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSG 363
GKEIQR + K GN P K T PQ +++ I + Q ++ + +Q+
Sbjct: 277 GKEIQRNVGNVEKENPQVGNAPVDKPTQEVPQ--NQLPTQIPQSVQNQLPTQIPQSVQN- 333
Query: 362 QIPGQKP 342
Q+P Q P
Sbjct: 334 QLPAQIP 340
>06_01_0218 +
1647624-1647757,1648044-1648112,1648493-1648549,
1648768-1648934,1649661-1649716,1650319-1650490,
1650747-1650810,1651037-1651119,1651243-1651334,
1652028-1652134,1652398-1652461,1652630-1652770
Length = 401
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 66 LYCICSFEDLCSICLLSQV**FQVSFQLKI*KYSKTLSFFLFSQRNVSALTAS 224
+YCICS + +CS ++ Q Y + +S F F N + AS
Sbjct: 131 IYCICSTKSICSGTCCKGPNIMAIAGQESSQNYLRAVSLFYFLMHNTECIHAS 183
>08_01_1065 -
10868890-10869999,10870925-10871004,10871224-10871283,
10871490-10871678,10871931-10872092,10872989-10873100
Length = 570
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -2
Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFK-MPELRLLDFRKIKQKERDEANAL 558
L D D +T +TLS++H PV + H A + + +LD + + ++
Sbjct: 16 LVDDDTKNTRTATKTLSMLHCPVVS-THTTACAGLRTLSGDNMLDVQTVLCDVSKVVSSG 74
Query: 557 FKSRKGKEIQREIAKKAKTFVPGGNMPD 474
F R+ E + +I + VPG +M D
Sbjct: 75 FDFRRVNETEHQIPVIYQERVPGDSMDD 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,370,815
Number of Sequences: 37544
Number of extensions: 328783
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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