Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D02
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)                  47   2e-05
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)                  43   3e-04
SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)                  41   0.001
SB_9229| Best HMM Match : LRR_1 (HMM E-Value=0.038)                    38   0.011
SB_29143| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)               38   0.011
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 37   0.015
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)                 36   0.034
SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)                31   0.97 
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06)                 27   2.1  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    29   3.9  
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)                  29   5.2  
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              28   6.8  
SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)             28   9.0  

>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
 Frame = -2

Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 555
           L DL+PL ++  LR L +  +    K+    Y          +  + I    R E     
Sbjct: 593 LKDLEPLESVKSLRYLRIQGHAQQRKSSEYFYCKLHKLSPYEIGGKPINDNRRKEMQL-- 650

Query: 554 KSRKGKEIQREI--AKKAKTFVPGGNMPDPKVTNLTP----QEIHKIREAIKNASSLQEV 393
              KG  ++++   + K KTF PG N P  +V    P    +++  I+ AI NA SL EV
Sbjct: 651 ---KGCFLEKKAPPSSKPKTFTPGENPPAKRVEQKPPPPPSRDVAAIKAAIANAKSLDEV 707

Query: 392 ERLTRMLQSGQIPGQKPLQ 336
           + L R+L++GQ+PG  P Q
Sbjct: 708 QGLERLLKAGQVPGVVPTQ 726


>SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)
          Length = 377

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 46/84 (54%)
 Frame = -2

Query: 716 LSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGK 537
           L  + +L  L+L +NP+A    YR+YV  ++  L++LD R++ Q ER       K++K  
Sbjct: 210 LRAMQRLHDLNLFNNPLAQDYDYRSYVIHRIKSLKILDRREVLQAER------IKAQKKY 263

Query: 536 EIQREIAKKAKTFVPGGNMPDPKV 465
           E  RE+ K+  +F    + P  KV
Sbjct: 264 EPDREMVKETVSFGRRVDGPPQKV 287


>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
          Length = 335

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -2

Query: 716 LSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFK 552
           L     LRTL+L  NP    + Y+ YV   +P+L  LDFR I +  R+ A   +K
Sbjct: 152 LRRFKNLRTLNLSFNPFCEDSKYKEYVIAHLPDLVYLDFRLIDETAREAATERYK 206


>SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)
          Length = 192

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEA 567
           L ++D L+ LP L T+SL  NP+ + +H++ Y   K+  L L  F      ++D+A
Sbjct: 125 LHEIDKLAALPNLHTISLQGNPIEDDDHFKCYTTSKL--LHLKKFNSAPLTKQDKA 178


>SB_9229| Best HMM Match : LRR_1 (HMM E-Value=0.038)
          Length = 92

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 728 DLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLD 603
           DLD L+  PKL T+ L  NP++    YR  V   +P L+ +D
Sbjct: 46  DLDELAKCPKLHTVYLERNPLSRDTAYRRKVKLALPALKQID 87


>SB_29143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -2

Query: 689 LSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEA 567
           LS   +   +   YR Y+  K+P+L+ LD R +K++ER EA
Sbjct: 11  LSFTDHDEEDYQRYRYYILHKLPKLKFLDSRTVKEQERQEA 51


>SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)
          Length = 480

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 728 DLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLD 603
           DLD L+  PKL T+ L  NP++    YR  V   +P L+ +D
Sbjct: 434 DLDELAKCPKLHTVYLERNPLSRDTAYRRKVKLALPALKQID 475


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 725 LDPLSTLPKLRTLSLMHNPVANK-NHYRAYVAFKMPELRLLDFRKIKQKER 576
           +D L+ +P L  L+L+ NPV  K  +YR  +  K+  L+ LD R +  +ER
Sbjct: 121 VDVLAEMPNLSVLNLIGNPVIKKIKNYRKNMILKLKNLKYLDDRPVFPRER 171


>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
          Length = 681

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 24/74 (32%), Positives = 41/74 (55%)
 Frame = -2

Query: 728 DLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKS 549
           D++ L+    +  LSL  NP A+   Y+  V   +  LR LD ++I ++ER    A+  +
Sbjct: 340 DINCLTRSTSITELSLDGNPFASDVTYKQTVLKSVTCLRQLDMKRITEEER--RIAMVMA 397

Query: 548 RKGKEIQREIAKKA 507
           RK +E ++E+ K A
Sbjct: 398 RKEEEKKKEVNKLA 411


>SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)
          Length = 227

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -2

Query: 683 LMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGKEIQREIAKKAK 504
           L H+P  NKN     +A +  +LR L   K+ + + D  +      K + + +E A++  
Sbjct: 133 LWHSPETNKNGLLRQIAEREDKLRKLKMVKMYRTKNDLTDLQKLIDKWRNVSQEAAERLL 192

Query: 503 TFVPGGNMPDPKVTNLTPQ 447
           T +     P PK+  L  Q
Sbjct: 193 TKIK--KEPSPKMKELLDQ 209


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -2

Query: 728 DLDPLSTLPKLRTLSLMH-----NPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEAN 564
           DL  L  LP L++LSL       NPV+   +Y  ++ F +P+L  LD   +  K   E  
Sbjct: 99  DLTNLVHLPHLKSLSLKDPTYGPNPVSLLCNYATHLLFHLPKLTRLDSYDVDNKALKELA 158

Query: 563 ALFKSRK 543
               S+K
Sbjct: 159 EATVSKK 165


>SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06)
          Length = 632

 Score = 26.6 bits (56), Expect(2) = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 725 LDPLSTLPKLRTLSLMHNPVA 663
           ++ L TLPKLR L +  NP+A
Sbjct: 224 INTLKTLPKLRNLVMQGNPLA 244



 Score = 21.8 bits (44), Expect(2) = 2.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 650 YRAYVAFKMPELRLLDFRKIKQKERDEANALFKSR 546
           YR YV   +  L +LD  +I   E+     L K R
Sbjct: 272 YRGYVIDSIRALTILDDTRISADEKHYFKGLSKLR 306


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 435 LMDFLRCKICNFRIRHISTRYKGLC-FFSNLPLYFFPFSTLEQCIGFISLFLFNLPEV 605
           LM F  C +C +R R + T+Y+ +  FF  +P      S L + +G +S  L   PE+
Sbjct: 176 LMAFGACALCRWRRRRM-TKYREITDFFEPIPRMASSPSPLYKSLGSLSGSLSTFPEL 232


>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
          Length = 685

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 444 NP*DPRSNQECIIPTGGRTSDQNVAVWSDSRTKTFTACDT 325
           N  D  ++   I  TGG T+D+++  W+ S   T  + DT
Sbjct: 544 NSNDNNTSSSGIEATGGGTADRHIRFWNGSTGATLNSVDT 583


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -2

Query: 566 NALFKSRKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVER 387
           N  F+S    ++ R IAK   TF P  + P   + NL    I     A  NA+S    + 
Sbjct: 273 NLKFESFSKDDLDRIIAKFLVTFTPDDDSPADPLANLR-NAIQGNVPASANATSNSTADS 331

Query: 386 LTRMLQSGQIPGQK 345
           + R    G + G++
Sbjct: 332 VKRSAIKGMLYGEQ 345


>SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -2

Query: 602 FRKIKQKERDEANALFKSRKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREA 423
           F KI + +  +A  L++  K K  +RE  +  K      N+ D +   + P E   + + 
Sbjct: 113 FEKIAKAQLKKATKLYQQEKRKSEEREKKEAEKAQQREKNLEDARNITIKPDESLPVAKQ 172

Query: 422 IK 417
           IK
Sbjct: 173 IK 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,552,110
Number of Sequences: 59808
Number of extensions: 397736
Number of successful extensions: 903
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)