Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D02
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-2|AAK31542.1|  253|Caenorhabditis elegans Spliceosome-a...   101   4e-22
L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z68131-2|CAA92218.1|  614|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    28   7.9  

>AC006661-2|AAK31542.1|  253|Caenorhabditis elegans
           Spliceosome-associated proteinprotein 1 protein.
          Length = 253

 Score =  101 bits (243), Expect = 4e-22
 Identities = 49/131 (37%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
 Frame = -2

Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 555
           LGD++PL+   KL  ++ + NP+ +K++YR Y+ +K+P +R++DF +++  ER+ A  +F
Sbjct: 103 LGDIEPLAECKKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMF 162

Query: 554 KSRKGKEIQREIAKKAKTFVPGGNMPDPKVT----NLTPQEIHKIREAIKNASSLQEVER 387
           K + GK+ +  I K   T  P    P+   +     LT ++  KI+EAIKNA SL EV  
Sbjct: 163 KGKSGKKARDAIQKSVHTEDPSEIEPNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNY 222

Query: 386 LTRMLQSGQIP 354
           L  +L SG++P
Sbjct: 223 LQSILASGKVP 233


>L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical
           protein F09G8.5 protein.
          Length = 484

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANK--NHYRAYVAFKMPELRLLDFRKIKQKERDEA 567
           L +L+ L  LP LRTL +  NP   +    YR  V   +P L  LD + +   +  EA
Sbjct: 177 LDELEYLKELPNLRTLWIDENPCVGEGGQEYRRKVIRVLPNLTKLDDKPVTTTDHQEA 234


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
            F48F5.1 protein.
          Length = 1291

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 25/102 (24%), Positives = 46/102 (45%)
 Frame = -2

Query: 665  ANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGKEIQREIAKKAKTFVPGG 486
            A KN   A +  K    +++D +   Q+E+DE  A  ++ + K   R+IA+K K      
Sbjct: 815  AEKNALEAKIKEKSNMRKVVDEQN--QREKDELQAKLRADQEKSEARKIAEKKKDEQNQK 872

Query: 485  NMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQ 360
                    +    E  K+ E  K+  + +E ++L   L++ Q
Sbjct: 873  EKEAKLRADQEKSEARKVAEKKKDEQNQKEKDKLQAKLRADQ 914


>U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical
           protein C04E7.3 protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -2

Query: 599 RKIKQKERDEANALFKSRKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIR 429
           +K+   ER+E + L  +R  K    ++  + K+ V    + + ++ N   QE+H+I+
Sbjct: 341 KKMMSMERNEVDFLRNARYSKHGNLKVWNQFKSLVKANKLLEEEIINQKCQELHEIK 397


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 725 LDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLD 603
           +D L  LP+L ++ L  NP+A+ + YR  V   + ++  LD
Sbjct: 270 MDELVELPQLNSVYLDFNPIASVDTYRGKVIHLLQQITRLD 310


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 512 KAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNA 411
           KA+ F P G++P   V+ LTP + H+  + + N+
Sbjct: 295 KARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNS 328


>Z68131-2|CAA92218.1|  614|Caenorhabditis elegans Hypothetical
           protein B0395.3 protein.
          Length = 614

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 557 TMHWLHLSLFVXXXXXPIILALAF*MPHMPYNGFCWQLDCA*VIMXAALVMYLMDPNHQ 733
           T  WL+++        P++ +     P   YN    QL+ A  I  AA+  YL   N+Q
Sbjct: 84  TPWWLNIAYLAARTPLPVVTSPGVMFPKFDYNTEEGQLEYAAKISQAAVHFYLRAKNNQ 142


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 655 FLLATGLCMSDNVRSFGNVLN 717
           +++  G+C+SD V+SFG ++N
Sbjct: 86  YIVMIGICISDIVQSFGTMMN 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,518
Number of Sequences: 27780
Number of extensions: 313116
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)