Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_D02
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09760.1 68414.m01095 U2 small nuclear ribonucleoprotein A, p... 101 5e-22
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 39 0.004
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si... 29 3.2
At4g27890.1 68417.m04003 nuclear movement family protein contain... 29 3.2
At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SD... 28 5.6
At1g72460.1 68414.m08379 leucine-rich repeat transmembrane prote... 28 5.6
At1g02290.1 68414.m00171 expressed protein 28 5.6
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote... 28 7.4
At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3... 28 7.4
At1g56660.1 68414.m06516 expressed protein 28 7.4
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 28 7.4
At5g19400.1 68418.m02312 expressed protein 27 9.8
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge... 27 9.8
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 27 9.8
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 27 9.8
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 27 9.8
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 27 9.8
At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containi... 27 9.8
>At1g09760.1 68414.m01095 U2 small nuclear ribonucleoprotein A,
putative identical to U2 small nuclear ribonucleoprotein
A' (U2 snRNP-A') [Arabidopsis thaliana]
SWISS-PROT:P43333; supported by
cDNA:gi_16649064_gb_AY059902.1_
Length = 249
Score = 101 bits (242), Expect = 5e-22
Identities = 52/129 (40%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = -2
Query: 734 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 555
L ++DPL+++PKL+ LSL+ N + K +YR YV K+ LR+LDF KIK KER EA +LF
Sbjct: 103 LVEIDPLASIPKLQYLSLLDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLF 162
Query: 554 KSRKGKEIQREIAKK--AKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLT 381
S++ +E ++++++ K N PKV T ++I I+ AI N+ +++E+ RL
Sbjct: 163 SSKEAEEEVKKVSREEVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLE 222
Query: 380 RMLQSGQIP 354
+ L+ GQ+P
Sbjct: 223 QALKFGQVP 231
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = -2
Query: 698 LRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEA 567
L+ +S +P+ ++ HYR Y+ +P+L++LD I++ +RD+A
Sbjct: 324 LKYISSKASPICSEKHYRMYMINSLPKLQVLDNLAIRKSDRDKA 367
>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
similar to 17.9 kDa heat-shock protein [Helianthus
annuus] GI:11990130; contains Pfam profile PF00011:
Hsp20/alpha crystallin family; supporting cDNA
gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
small heat shock-like protein (RTM2) GI:7407072, small
heat shock-like protein [Arabidopsis thaliana]
GI:7407073
Length = 366
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -2
Query: 710 TLPKLRTLSLMHNPVANKNHYRAYV-AFKMPELRLLDFRKIKQKERDEANALFKS--RKG 540
T+PK + + P ++ A A K+ E RLL+ + K+KE +EA + K +
Sbjct: 100 TMPKETITKVAYLPETSRTEAAALEKAAKLEEKRLLEESRRKEKEEEEAKQMKKQLLEEK 159
Query: 539 KEIQREIAKKAK 504
+ + R++ ++AK
Sbjct: 160 EALIRKLQEEAK 171
>At4g27890.1 68417.m04003 nuclear movement family protein contains
Pfam profile: PF03593 nuclear movement protein
Length = 293
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -2
Query: 587 QKERDEANALFKSRKGKEIQREIAKKA--KTFVPGGNMPDPKVTNLTPQEIHKIREAIKN 414
+K+ E + K+ RE KK K V + PK +L P E+ K +E
Sbjct: 45 KKDTAEKEIVAAVMAAKQRLREAEKKKLEKESVKSMEVEKPKKDSLKPTELEKPKEESLM 104
Query: 413 ASSLQEVERLTRMLQSGQIPGQK 345
A+ E+E+ +SG I K
Sbjct: 105 ATDPMEIEKPKEEKESGPIVPNK 127
>At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 326
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 590 KQKERDEANALFKSRKGKEIQREIAKKAKTFVPGGN 483
+QK R E A+ + G E+AKKA + GN
Sbjct: 229 EQKSRPEVTAIIAASSGSMETEEVAKKAMDGIKAGN 264
>At1g72460.1 68414.m08379 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00560 leucine
rich repeat (5 copies), PF00069 eukaryotic protein
kinase domain
Length = 644
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 728 DLDPLSTLPKLRTLSLMHN 672
D+ PL LP LRT+S+M+N
Sbjct: 82 DVAPLKDLPSLRTISIMNN 100
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 617 LRLLDFRKIKQKERDEANALFKS-RKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEI 441
L+LLD ++ KE D A FK+ K ++R K+ TF G+ + +T + +
Sbjct: 178 LKLLDLNRVPSKEMDSATCRFKTPNVVKPVERN-RSKSLTFPRSGSSKNSLKIKITKEGV 236
Query: 440 HK 435
+
Sbjct: 237 FR 238
>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
[Petunia integrifolia]
Length = 679
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 728 DLDPLSTLPKLRTLSLMHN 672
DL+PL+ + LRTLS M+N
Sbjct: 111 DLEPLAAIKNLRTLSFMNN 129
>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
similar to auxin transport protein [Arabidopsis
thaliana] gi|5817301|gb|AAD52695
Length = 640
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 450 SRNP*DPRSNQECIIPTGGRTSDQN 376
++NP D +NQ+ +PTGG+++ +
Sbjct: 328 NKNPKDVNTNQQTTLPTGGKSNSHD 352
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 674 NPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGKEIQRE 522
N A+K V+ + EL D +K K+KE+DE+ K +K K+ +++
Sbjct: 150 NKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQ 200
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 627 FECHICPIMVFV-GNWIVHE**CXQLW*CT 713
F C C + V G+W HE C +LW CT
Sbjct: 265 FSCGKCGKALAVKGDWRTHEKNCGKLWYCT 294
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 581 ERDEANALFKSRKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKI 432
+ D+ A + K I EIA+ A GN PDP + L ++ I
Sbjct: 5 QMDKTTASSSWERAKSIYDEIAELANKRQKAGNPPDPNLLQLLREKYEAI 54
>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
(glycogenin)-related similar to glycogenin
glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
Oryctolagus cuniculus [GI:165513]; contains Pfam profile
PF01501: Glycosyl transferase family 8
Length = 593
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 701 KLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKI 591
KLR + + NP+A K+ Y Y K +L D+ K+
Sbjct: 352 KLRRIIRIRNPLAEKDSYNEYNYSKFRLWQLTDYDKV 388
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 627 FECHICPIMVFV-GNWIVHE**CXQLW*CT 713
F C +C V G+W HE C +LW C+
Sbjct: 262 FACRMCGKAFAVKGDWRTHEKNCGKLWYCS 291
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 627 FECHICPIMVFV-GNWIVHE**CXQLW*C 710
F C +C ++ V G+W HE C + W C
Sbjct: 229 FSCRLCGKLLAVKGDWRTHEKNCGKRWVC 257
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 539 KEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNA 411
K+I + K +PG + D + T P ++HK R A+ A
Sbjct: 584 KDILLHLEKNLHLTIPGFSSEDKRQTKTVPTDLHKKRLAMVRA 626
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 539 KEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNA 411
K+I + K +PG + D + T P ++HK R A+ A
Sbjct: 584 KDILLHLEKNLHLTIPGFSSEDKRQTKTVPTDLHKKRLAMVRA 626
>At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile: PF01535 PPR
repeat
Length = 491
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 698 LRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALFKSRKGKEIQREI 519
LRTL + +N Y + P+L+ + K +EA A F+ KGK ++ ++
Sbjct: 187 LRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEMKGKGLKPDV 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,534
Number of Sequences: 28952
Number of extensions: 280593
Number of successful extensions: 725
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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