Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_D01
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein s...    30   1.8  
At3g01270.1 68416.m00033 pectate lyase family protein similar to...    27   9.5  

>At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein
           similar to basic endochitinase CHB4 precursor SP:Q06209
           from [Brassica napus]
          Length = 273

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 364 NVIFDIYLLILQLGVYF--NCLQFSCPGL 444
           NVIF +++L +     F  NC+  SCPGL
Sbjct: 5   NVIFSLFILAILAETVFSQNCMDTSCPGL 33


>At3g01270.1 68416.m00033 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 475

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 54  LEFLHTYLTHGIHISRIR*LSFQVLKDSTGYF 149
           ++++H  + HG+H+  I   S  +++DS  +F
Sbjct: 233 MQYVHNIIIHGLHVHHIVKSSGGLIRDSINHF 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,355,562
Number of Sequences: 28952
Number of extensions: 242299
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)