Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C22
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   0.63 
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   7.7  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   7.7  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    28   7.7  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 334 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 447
           RPS LT   YG+ GL+  +  K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = -3

Query: 658 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 494
           +L   +++    PL+   +C+ I   + TKD K K    L+K+ N   +DK+ V +L   
Sbjct: 61  RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119

Query: 493 -IDACLANK 470
            I+A L NK
Sbjct: 120 EIEARLENK 128


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 637 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 497
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 637 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 497
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 485 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 363
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 485 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 363
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 700 DCLSETKADEQLVNKLKTGDFKTENEPLK 614
           D +SE  A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 700 DCLSETKADEQLVNKLKTGDFKTENEPLK 614
           D +SE  A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 485 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 363
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,058,463
Number of Sequences: 27780
Number of extensions: 309710
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)