Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C20
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0298 - 21733620-21733805,21733900-21734025,21734128-217342...    28   4.2  
11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133           28   5.6  
01_04_0092 + 15950326-15951531                                         25   8.5  
04_01_0211 + 2649405-2649950,2650100-2650285,2650367-2650583,265...    27   9.8  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   9.8  

>02_04_0298 -
           21733620-21733805,21733900-21734025,21734128-21734213,
           21734751-21734866,21734951-21735628,21736080-21736105
          Length = 405

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 80  YTSTMSINVQHDLLHCIHC 136
           +  T   NVQHDL H IHC
Sbjct: 354 FDDTGITNVQHDLCHFIHC 372


>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
          Length = 997

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  IVNVINTRRYISHLHQHNVY*CTTRPTSL 126
           +VNV +   Y+ H HQ  +  C  +PT++
Sbjct: 801 VVNVSDALAYLHHNHQGTIIHCDIKPTNI 829


>01_04_0092 + 15950326-15951531
          Length = 401

 Score = 25.0 bits (52), Expect(2) = 8.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 526 SRPWSWAWSLKR 491
           S PW+W W L+R
Sbjct: 310 SWPWAWTWELER 321



 Score = 20.6 bits (41), Expect(2) = 8.5
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = -3

Query: 541 RARVRSRPWSWAWS 500
           R R     W WAW+
Sbjct: 303 RLRTGKGSWPWAWT 316


>04_01_0211 +
           2649405-2649950,2650100-2650285,2650367-2650583,
           2650705-2650781,2650884-2650892
          Length = 344

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 34  KFIVNVINTRRYISHLHQHNVY*CTTRPTSLYSLYKLHKKYNI 162
           +++VN  ++RR+   + QHN+    TR  S    Y L KK ++
Sbjct: 118 RWLVNAEDSRRWSGTIWQHNMLQYCTRDGSKDVWYDLAKKIHV 160


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 106  TTRPTSLYSLYKLHKKYNIAPSLIKISVKC 195
            TT P+ ++S Y+    YN AP + K+++KC
Sbjct: 2491 TTDPSEIHSFYE----YNSAPVMEKLAMKC 2516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,761
Number of Sequences: 37544
Number of extensions: 202504
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)