Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C20
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42024| Best HMM Match : DUF1268 (HMM E-Value=8.2)                   28   5.7  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       28   5.7  
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                  27   7.6  
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                 27   7.6  

>SB_42024| Best HMM Match : DUF1268 (HMM E-Value=8.2)
          Length = 139

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 17  ALKQNKNLSST*LILEGTFHIYTSTMSINVQHDLLHCIHC 136
           A+ Q KNL+   L +    ++ T+  ++N+  +  HC HC
Sbjct: 89  AVHQTKNLTDNTLKITPENYVLTNKQTLNLIANNAHCEHC 128


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 17  ALKQNKNLSST*LILEGTFHIYTSTMSINVQHDLLHCIHC 136
           A+ Q KNL+   L +    ++ T+  ++N+  +  HC HC
Sbjct: 121 AVHQTKNLTDNTLKITPENYVLTNKQTLNLIANNAHCEHC 160


>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 17   ALKQNKNLSST*LILEGTFHIYTSTMSINVQHDLLHCIHC 136
            A+ Q KNL+   L +    ++ T+  ++N+  +  HC HC
Sbjct: 1321 AVHQTKNLTDNTLKITPENYVLTNKQTLNLIANNAHCEHC 1360


>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 314

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = -2

Query: 230 VHGLDKSLSR*KHLTDIFIKDGAILYFLCSLYSEYSEVGRVVH**TLCWCKCEMYLLVLI 51
           V GL   +S  K L DIF   G +L    S+Y  +S     V   TLC    E YLL+L+
Sbjct: 87  VTGLVFKVSIYKDLEDIFCPSGVVLEV--SVYFFFS-----VSFLTLCCTSLERYLLLLL 139

Query: 50  TLTIN 36
            L  N
Sbjct: 140 HLRYN 144


>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 325

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = -2

Query: 230 VHGLDKSLSR*KHLTDIFIKDGAILYFLCSLYSEYSEVGRVVH**TLCWCKCEMYLLVLI 51
           V GL   +S  K L DIF   G +L    S+Y  +S     V   TLC    E YLL+L+
Sbjct: 98  VTGLVFKVSIYKDLEDIFCPSGVVLEV--SVYFFFS-----VSFLTLCCTSLERYLLLLL 150

Query: 50  TLTIN 36
            L  N
Sbjct: 151 HLRYN 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,174
Number of Sequences: 59808
Number of extensions: 267853
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)