Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C20
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    28   4.7  
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa...    28   4.7  
At2g33385.1 68415.m04092 actin-related protein 2/3 complex 34kDa...    27   6.2  
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila...    27   8.2  

>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 185 QSNAFILKAICQVRVQAISRLTDGYYSEIVFFLNFTLERERTKIT*RQSSRASRYSFFS 361
           +S + + +A       +I  L+DG  +  V  LN + + +R K    QSS+ S  SFF+
Sbjct: 419 KSTSGVTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFT 477


>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
           family protein
          Length = 408

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 185 QSNAFILKAICQVRVQAISRLTDGYYSEIVFFLNFTLERERTKIT*RQSSRASRYSFFS 361
           +S + + +A       +I  L+DG  +  V  LN + + +R K    QSS+ S  SFF+
Sbjct: 218 KSTSGVTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFT 276


>At2g33385.1 68415.m04092 actin-related protein 2/3 complex 34kDa
           subunit family / arp2/3 complex 34kDa subunit family low
           similarity to SP|O15144| ARP2/3 complex 34 kDa subunit
           (P34-ARC) (Actin-related protein 2/3 complex subunit 2)
           {Homo sapiens}; contains Pfam profile PF04045: Arp2/3
           complex, 34 kD subunit p34-Arc
          Length = 365

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 294 LKESALKLHSVKAHVRHDTHFSPFKTSYEIVGYSIKNDN 410
           LKE+ LK++  +  +  D HF  F +    + YS+ + N
Sbjct: 11  LKETLLKIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPN 49


>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
           to WRN (Werner syndrome) protein - Mus musculus,
           EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00627: UBA/TS-N domain
          Length = 858

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 83  TSTMSINVQHDLLHCIHCINYTKNII 160
           T+T ++NVQ D+L  +H    TK ++
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVL 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,118,942
Number of Sequences: 28952
Number of extensions: 182665
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)