Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_C19
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical p... 29 2.0
Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical p... 29 2.0
Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF067947-8|AAC19225.1| 343|Caenorhabditis elegans Kinetochore n... 28 4.6
AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical ... 28 6.0
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 27 8.0
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF039716-7|AAB96735.3| 617|Caenorhabditis elegans Sodium:neurot... 27 8.0
>Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 380 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 288
++ A ++ CP+ A PST T+SC C EP
Sbjct: 478 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 509
>Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 380 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 288
++ A ++ CP+ A PST T+SC C EP
Sbjct: 490 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 521
>Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 380 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 288
++ A ++ CP+ A PST T+SC C EP
Sbjct: 478 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 509
>Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 380 HFTASLSMHPTCPMRAVPSTTTTSCQKQC-EP 288
++ A ++ CP+ A PST T+SC C EP
Sbjct: 490 NWRAQINCPLACPLNAHPSTCTSSCPSTCAEP 521
>AF067947-8|AAC19225.1| 343|Caenorhabditis elegans Kinetochore null
protein 3 protein.
Length = 343
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 440 TSSCPKTSQVRPLQN*ADMLHFTASLSMHPTCPMRAVPSTTTTSCQKQCEP 288
T CP+T V ++ D+ ++ P+ P RA P+ T C+K P
Sbjct: 80 TQGCPETFSVSEHEDDDDVEPMEVDGTIVPS-PQRATPTRGVTPCEKSTTP 129
>AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical
protein Y46D2A.2 protein.
Length = 326
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 413 VRPLQN*ADMLHFTASLSMHPTCPMRAVPSTT-TTSCQKQCEPHVQNLIFKSYIMKLTTE 237
+ PLQ D +FTAS M T + V TT+ V + +F+ +++K +
Sbjct: 154 IEPLQIGLDYWYFTASEPMSMTMESKYVSDLVYTTTSVNTTGLVVNDFLFQEHVVKFQLD 213
Query: 236 LTLFQATSDRIYAL 195
LT + + A+
Sbjct: 214 LTRVRTIGTLVSAI 227
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.0
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = -2
Query: 506 TTVPLLQR*VNPAAPKRT------AAWYTSSCPKTSQVRPLQN*ADMLHFTASLSMHPTC 345
TTVP+ + V P T A YT S P T+ +S
Sbjct: 610 TTVPITKTCVPQCQPACTQECVQQATTYTISIPMTTAAPSCAPQCQPACDPQCISFTLKL 669
Query: 344 PMRAVPSTTTTSCQKQCEPHVQNLIFKSY 258
P+ P T SCQ QC+P Q ++Y
Sbjct: 670 PVMTTPPPTP-SCQPQCQPACQPSCMETY 697
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 474 PGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNN 313
P +D L+ Q+ S D + LS++AP + + S SPF H N
Sbjct: 62 PDAASQDYQLIGQESSSDHSVSLATPLSKHAPDRRSSFLKRSASGHESPFSHPN 115
>AF039716-7|AAB96735.3| 617|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 1
protein.
Length = 617
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 279 LYVWLTLLLARCCCGGRDCSHRTC 350
LY ++T+L A CCC G+D + +TC
Sbjct: 547 LYFFMTILCA-CCCKGKDHA-KTC 568
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,260
Number of Sequences: 27780
Number of extensions: 255107
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -