Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_C18
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 35 0.010
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 35 0.010
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 35 0.010
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 35 0.010
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 35 0.010
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 35 0.010
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 35 0.010
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 35 0.010
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 35 0.010
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 35 0.010
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 35 0.010
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.2
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 4.8
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 714 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVXRKNRYXVEKADA 577
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 133 LHPSYHAFNKTSFPHSAVLHVSLS--SELP-FYNTNILKH 243
LH Y+ NK + +S ++ VS++ LP FYN N++KH
Sbjct: 85 LHNRYN--NKQIYTYSGIVLVSINPYQNLPEFYNDNLIKH 122
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -3
Query: 612 RKNRYXVEKADAQVEGPNXTTTSADFMKKWPDYLSD 505
+KN Y ++K AQ + N ++KW D +++
Sbjct: 145 KKNEYEMKKKGAQSKQTNAPKKGKKQLRKWDDQITE 180
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 289 LFCLRMIYNFLYNFLYVLRC*CYK-KVTLRTDLRAGRPN 176
+F + M+Y LY LYV C CYK + + RPN
Sbjct: 73 IFIIEMLYYELYLTLYV--CWCYKLRSDFWNEAAKNRPN 109
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 600 IYSFFXPLLFDMVPKTLVSVSFLYQTESFSQLLSRL 707
+ SFF PLL+ + TL + FL+ S RL
Sbjct: 24 VCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,823
Number of Sequences: 5004
Number of extensions: 41698
Number of successful extensions: 123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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