Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C18
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                28   6.7  
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           28   8.9  

>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = -3

Query: 717  IYKEGDLVAV--KKTQFGTGMKLKPKFLGPYRIVK----VXRKNRYXVEKADAQVEGPNX 556
            I+K+GD V    KKT+ G  MKL   + GP+ +VK    V  + +Y  ++   +      
Sbjct: 1073 IFKKGDQVLWFDKKTRRGRCMKLNRPWSGPWIVVKRLNEVVYRIKYCGQERSIRTVNAML 1132

Query: 555  TTTSADFMKKWPDYLS 508
                +D  K W  YLS
Sbjct: 1133 AKVVSDDQKNWDLYLS 1148



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 717  IYKEGDLVAV--KKTQFGTGMKLKPKFLGPYRIVKVXRKNRYXVE 589
            I+K+GD V    KKT+ G  MKL   + GP+ +VK   +  Y ++
Sbjct: 1235 IFKKGDQVLWFDKKTRRGRYMKLNRPWSGPWIVVKRLNEVVYRIK 1279


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 97  HSRYTTAFTNINLHPSYHAFNKTSF 171
           H  Y TAF  I   P+ HAF  T+F
Sbjct: 561 HGGYVTAFMMIESVPTSHAFKNTTF 585


>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 3   RYINFNCSVVLVLRSSSFIYLSFCHLTRHPLPFSIYHCVHKHQ 131
           RY+N N + +  L+   + YL+    T H L    YH ++ ++
Sbjct: 611 RYLNSNRTTIHALKGEHYRYLNASRTTIHALKGETYHYLNTNR 653


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,731
Number of Sequences: 59808
Number of extensions: 298195
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)