Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C18
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical...    29   2.6  

>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 411 LLAY-DVLISFYHKMSFVFFLS*FCCNMFSL*SYDVNVIVVNCFV 280
           LL Y D+L   +  M+ V+ ++  CC + ++ S+ +N  ++ CF+
Sbjct: 15  LLQYSDILHLLFVCMAMVYLVTDVCCLVAAVLSFCINFFIITCFL 59


>AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical
           protein H20J04.1 protein.
          Length = 843

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 717 IYKEGDLVAVKKTQFGTGMKLKPKF 643
           +YK+ DL  V  TQ GTG+ + P F
Sbjct: 250 VYKKVDLTRVSATQVGTGVAISPFF 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,978
Number of Sequences: 27780
Number of extensions: 228706
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)