Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C16
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   5.3  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   5.3  

>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 483 YHHNKANFYSSSICKGMPSQ-LYPQ 554
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 483 YHHNKANFYSSSICKGMPSQ-LYPQ 554
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 320 RNA*SSIKQCNNSFLHNFFEN 382
           +N  S +K+ NNSFL NF  N
Sbjct: 6   KNKESGVKKANNSFLQNFGVN 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,319
Number of Sequences: 5004
Number of extensions: 57950
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)