Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_C16
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51720.1 68418.m06414 expressed protein 81 8e-16
At5g27890.1 68418.m03347 expressed protein 31 1.1
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 30 1.5
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro... 30 2.0
At3g06300.1 68416.m00723 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 2.0
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr... 29 3.5
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 28 6.1
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ... 28 6.1
>At5g51720.1 68418.m06414 expressed protein
Length = 108
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = -3
Query: 690 IPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKAS-LCRCW 514
+P V GG Q + R G G INP IRK+ +KVVD + + ++++ + CRCW
Sbjct: 18 LPFKPVTGGEVGRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCW 77
Query: 513 RSKNWPYCDGSHGPHNKETGDNTGPVVVR 427
RS +P CDGSH HNK GDN GP++++
Sbjct: 78 RSGTFPLCDGSHVKHNKANGDNVGPLLLK 106
>At5g27890.1 68418.m03347 expressed protein
Length = 399
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 659 DIPPTTTVGGISANQSLTPRRNHPPTESGIGKLDR 763
D P GGISA+ + R+H P+ S +GK R
Sbjct: 154 DFRPRGAFGGISASLAAVRTRDHSPSSSEMGKASR 188
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +3
Query: 357 RFYITFLKT--TLAIYLFVFSWL 419
RF+ F+ T TL IY+F FSWL
Sbjct: 189 RFFFMFISTSTTLCIYVFAFSWL 211
>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to cDNA SAC domain
protein 4 (SAC4) GI:31415724
Length = 831
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -3
Query: 660 SYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLC 523
S + + ++K + GS I ++D++ V +F+DIE ++ +LC
Sbjct: 706 STHFFGDVQKVQHNGSSSIYLSEQEDMSSVSNFVDIEWLSSSENLC 751
>At3g06300.1 68416.m00723 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 299
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 506 KIGLIVMVVTVLIIKKLATTPAQSLSDTNQPTKYKQINSK 387
++GL++ V +L++ + +T S S P+K KQ++SK
Sbjct: 5 RLGLLLFVAILLVLLQSSTCLISSPSSIINPSKVKQVSSK 44
>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 632
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 639 IKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWP 496
+KK + G++ I KD+N D +++E+I + A LC + + P
Sbjct: 520 VKKLHQ--EGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRP 565
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -3
Query: 744 PDSVGGWFRLGVKDWLALIPPTVVVGGISYYS-YQTIKKAREAGSGQINPCIRKDINKVV 568
PD+VGG GV++ + +I ++ G Y + +T++KA+ S + +R D+ K +
Sbjct: 1066 PDTVGGAMMTGVREAVRII--DILRSGNDYTAEIETLEKAQRK-SVPVRDEVR-DLIKRL 1121
Query: 567 DFIDIEDITEKASLCR 520
+ +++ ++ + SL R
Sbjct: 1122 EVVELSNVLARQSLLR 1137
>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 338
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +3
Query: 360 FYITFLK--TTLAIYLFVFSWL 419
F++ FL T L IY+FVFSW+
Sbjct: 186 FFVCFLSCSTLLCIYVFVFSWV 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,175
Number of Sequences: 28952
Number of extensions: 288136
Number of successful extensions: 652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -