Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C15
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   4.0  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   7.0  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   9.2  

>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 398 WPAFRTSSEKSRLHSSAGLGPRQGPXHSA 484
           WP FR+   +S L+ ++G  P   P +S+
Sbjct: 112 WPYFRSLRRESMLYHTSGSYPESQPPYSS 140


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 188 YHFRVDIHKGLQSHISVHYHTNLYKIILKINITFCW 295
           Y++ V I + LQS+IS        K IL I    CW
Sbjct: 202 YNWWVSILRRLQSNISTSERITYTKAILAIAKHHCW 237


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 381 ADRSQFGRPSGLHQKSHVCIRQRAWVRGR 467
           ++ S +G  + LH ++ +C+RQR    GR
Sbjct: 467 SNNSLYGYSTLLHPRNPICVRQRIGRGGR 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,791
Number of Sequences: 5004
Number of extensions: 49026
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)