Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C15
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   2.4  
11_02_0102 + 8314115-8314540                                           29   4.1  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    29   4.1  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    28   7.2  

>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 507 LGRE-SYRHAEWXGPCLGPKPAD---ECKRDFSDEVLKAGQTVIGLQAGSNKG 361
           L RE S +++++ GPCL   P D    C++D++ +  +  +  +G   G+  G
Sbjct: 72  LRRELSGKNSKYKGPCLATNPIDRCWRCRKDWATDRKRLARCAMGFGRGATGG 124


>11_02_0102 + 8314115-8314540
          Length = 141

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 374 PACR-PITVWPAFRTSSEKSRLHSSAGLGPRQGPXHSACL*DSRPRANS 517
           P CR P  V     + + + R  +  GLGPR+G   S+C+  S  R  S
Sbjct: 23  PGCRRPRLVELGASSGATRQRESNDTGLGPRRGRPPSSCVDGSLGRRRS 71


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 625 HHKLPVCNQSIRCTRHRCVPNRRSMGEKRHRPSSQH 518
           HHKL    Q I   R R +   +S G+ R +   QH
Sbjct: 468 HHKLYATMQDIAVRRRRAIVQGKSWGKTRSQERQQH 503


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 519 C*LLGRCLFSPIDLRFGT--HRCRVHRML 599
           C L+ R L  P+D+RF +    CRVH ++
Sbjct: 476 CELVNRSLVQPVDIRFDSKARACRVHDIM 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,384
Number of Sequences: 37544
Number of extensions: 334369
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)