Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C15
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   7e-12
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)                      45   6e-05
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)                    39   0.003
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.028
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            36   0.028
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.34 
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)                     31   0.60 
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  30   1.4  
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)                28   5.6  

>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
 Frame = -3

Query: 633 MEXITNFQSAIKA-YGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWXGPCLG 457
           ME I NF S I+   GV   D+FQTVDL+EK ++  V+  + A+GR +Y   +   P LG
Sbjct: 491 MENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGK-DVPQLG 549

Query: 456 PKPADECKRDFSDEVLKAGQTVI-GLQAG--SNKGATQSGQNLGAGRKIL 316
           PK + +  R F++  L  G+T+I   Q G  +   AT SGQ+ G  R+I+
Sbjct: 550 PKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQII 599


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 32/80 (40%), Positives = 48/80 (60%)
 Frame = -3

Query: 636 MMEXITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWXGPCLG 457
           MME    F       GVP  D+FQTVDL+EK+++  V++ + ALGR+++   +     LG
Sbjct: 126 MMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK-TCLALG 184

Query: 456 PKPADECKRDFSDEVLKAGQ 397
           PK A    R+F++E  +AGQ
Sbjct: 185 PKEASANPREFTEEQRRAGQ 204


>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
          Length = 89

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = -3

Query: 633 MEXITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWXGPCLGP 454
           ME I NF    ++ GV  +D+FQTVDL+EK+++A            + R      P LGP
Sbjct: 18  MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMA------------AARAKGLNCPQLGP 65

Query: 453 KPADECKRDFSDEVLKAGQTV 391
           K A+   R F ++ L+AG+ +
Sbjct: 66  KEAEANPRSFDEDKLRAGKGI 86


>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
          Length = 195

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -3

Query: 633 MEXITNFQSAIKAYGVPDIDVFQTVDLWEKKDIA--QVVSTLFALGRESYRHAEWXGPCL 460
           ME I NF S     GV   D FQT DL++  ++   Q++  L               P L
Sbjct: 85  MENIGNFLSHCGHLGVASGDQFQTADLYDNANMTSCQLIKDLDI-------------PTL 131

Query: 459 GPKPADECKRDFSDEVLKAGQTVI 388
           GPK A+   R+F++E L+AG++++
Sbjct: 132 GPKEAEANVREFTEEQLRAGESIL 155


>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = -3

Query: 636 MMEXITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 535
           MME I  F + IK+YGV +  +F TVDL+EK+++
Sbjct: 210 MMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = -3

Query: 636  MMEXITNFQSAIKA--YGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRH 484
            M E I NF +A +   +     D+FQTV L+E++++ QV+S + A  R+  +H
Sbjct: 897  MQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKVRKH 949


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = -3

Query: 633 MEXITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYR 487
           M  I  F      +GV   D+FQTVDL+EK++I QV   +  L R   R
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQVNDMMKRLIRHHRR 748


>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -3

Query: 468 PCLGPKPADECKRDFSDEVLKAGQTVI 388
           P LGPK A+   R+F++E L+AG++++
Sbjct: 10  PTLGPKEAEANVREFTEEQLRAGESIL 36


>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
          Length = 172

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 636 MMEXITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 526
           MME I NF + ++  GV     F T+DL+E K++ QV
Sbjct: 124 MMENIENFCNFVQTKGVASQYQFVTIDLFEGKNMHQV 160


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 464  QGPXHSACL*DSRPRANSVLTTW-AMSFFSHRS--TVWNTSMSGTPYALIADW 613
            + P   A L DSRP A S+LT W  ++  SH +   V    +S   Y L A+W
Sbjct: 1902 KSPQLRASLADSRPPATSLLTQWQGVATTSHETPHVVMEFLLSLQQYELAAEW 1954


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -3

Query: 630 EXITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYR 487
           + ++NF    +   VPD+ +F+T DL   K+   V+ TL  + R++++
Sbjct: 108 DNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFK 155


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 462 LGPKPADECKRDFSDEVLKAGQTVIG 385
           LGP P+D+  RDF    L++GQ V G
Sbjct: 233 LGPDPSDKKVRDFIWNTLQSGQVVPG 258


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 636 MMEXITNFQSAI-KAYGVPDIDVFQTVDLWEKKDIAQV 526
           M E I+ F     +  G+  +++FQTVDL+E++++  V
Sbjct: 339 MQENISKFLDFCERVLGLDRLNLFQTVDLFERQNVGMV 376


>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
          Length = 307

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 415 SPEGRPNCDRSAGWI*QGSHSIRTEPWRRPQDLDRQVNATPAKS 284
           +P+  P  D +     +G H  +  PW+ P+  D  V++T AKS
Sbjct: 170 APQQDPPVDSARARSPRGQHHSKKPPWKAPEQ-DPPVDSTRAKS 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,481
Number of Sequences: 59808
Number of extensions: 399353
Number of successful extensions: 953
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)