Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C15
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-...    29   3.4  
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-...    29   3.4  
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos...    28   6.0  
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos...    28   6.0  
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos...    28   6.0  

>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
           Zea mays, EMBL:X58573
          Length = 235

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 492 YRHAEWXGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 361
           Y    + GP L P+  D  KR+F DE+LK   T +     S KG
Sbjct: 99  YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140


>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
           [Zea mays] EMBL:X58573
          Length = 237

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 492 YRHAEWXGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 361
           Y  + + GP L P+  D  KR+F +E+LK   +T +    GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143


>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 560

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 456 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 325
           P PA +  +D   +   ++KA  T +GL +  + G ++ G N LGAGR
Sbjct: 46  PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93


>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 560

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 456 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 325
           P PA +  +D   +   ++KA  T +GL +  + G ++ G N LGAGR
Sbjct: 46  PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93


>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 557

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 456 PKPA-DECKRDFSDE--VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 325
           P PA D  K    D   ++KA  T +GL +  + G ++ G N LGAGR
Sbjct: 44  PTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,041,902
Number of Sequences: 28952
Number of extensions: 262747
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)