Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C10
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    94   5e-20
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    55   2e-08
12_02_0172 - 14891923-14892102,14892894-14892980                       29   1.5  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    28   2.6  
12_01_0152 - 1168928-1169377                                           28   3.4  
11_01_0155 - 1287003-1287452                                           28   3.4  
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797...    28   3.4  
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701...    27   5.9  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   7.8  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 93.9 bits (223), Expect = 5e-20
 Identities = 51/99 (51%), Positives = 62/99 (62%)
 Frame = -3

Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 184
           M ++K  ELR K+              L+ LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 183 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 67
             QK +  LR  YK K   PLDLR KKTRA+R+ LTKH+
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQ 99


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 40/106 (37%), Positives = 53/106 (50%)
 Frame = -3

Query: 375 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIAR 196
           VTV M ++K   LR ++              L+ LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 195 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 58
            Y               K K   PLDLR KKT A+R+ LTKH+  +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -3

Query: 267 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPL---DLRAKK 103
           +A +  GV  K+S       A  R    +V H+ +++  RNH  ++KY+     +   + 
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRSSLLGETPGRS 60

Query: 102 TRAMRKA-LTKHEAKIKXEER 43
            RA  K  +TK+ AK   E++
Sbjct: 61  RRAKTKGFVTKNRAKPGDEDQ 81


>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
            18230710-18231949,18232085-18232419,18232500-18232577,
            18232872-18232978,18233020-18233062
          Length = 1506

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = -3

Query: 273  LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 94
            L  A+    +  K    R +RKA A++     ++ K   +   + KK +  D+ AKK + 
Sbjct: 1329 LEAAEAAKRLEEKKQNEREMRKAAAKLERERLKQEKELKQKQEEQKKKRDADVAAKKRQR 1388

Query: 93   MRKALTKHEAKIKXEERDQKEISLPT 16
              +   + + K K  E  +K+   PT
Sbjct: 1389 GEEERKEKQRKRKCTEEARKQQKQPT 1414


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 261 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 172
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 261 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 172
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>05_06_0020 +
           24976990-24977167,24978763-24978874,24979634-24979722,
           24979801-24979869,24979953-24980082,24980506-24980664,
           24980767-24981127,24981343-24981452,24981753-24981909,
           24983336-24983748,24983828-24984020,24984384-24986198
          Length = 1261

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -3

Query: 120 DLRAKKTRAMRKALTKHEAKIKXEERDQK 34
           D RAKK +A +K   K+  KIK +ERD+K
Sbjct: 448 DKRAKKKQAKQK---KNNRKIKDKERDEK 473


>04_04_1462 -
           33769122-33769151,33769385-33769426,33769571-33770158,
           33770398-33770508,33770585-33770625,33771238-33771382,
           33771578-33771781,33772626-33772769,33772991-33773183,
           33774559-33774602,33774694-33774822,33774907-33774954,
           33775058-33775120,33775198-33775236,33776694-33776767,
           33777460-33777518,33777709-33777768,33777920-33778044,
           33778693-33778751,33779418-33779511,33779572-33779625,
           33779775-33779813,33780423-33780602
          Length = 854

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 234 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 115
           +SK   ++K + R  +  HQ +K +L    K  +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 169 HLLVIHNVNTCDSFSYNTDLG 231
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,215,415
Number of Sequences: 37544
Number of extensions: 116822
Number of successful extensions: 307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)