Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C10
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)        105   1e-23
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)                    30   0.87 
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   2.6  
SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score =  105 bits (252), Expect = 1e-23
 Identities = 58/108 (53%), Positives = 69/108 (63%)
 Frame = -3

Query: 357 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 178
           KVK  ELR K               L+ LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 177 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQK 34
           Q  + NLR  Y+ KKY PLDLR K TRAMR++LTK EA  K  ++ +K
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = -3

Query: 243 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 73
           ASK SK RV R  IA++    H  ++  +RN   N K     +R  K+RAM+K  T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642


>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
          Length = 245

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 24/115 (20%), Positives = 44/115 (38%)
 Frame = -3

Query: 378 NVTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIA 199
           N+TV + K K                      L N+   K  G V S +    V ++ I 
Sbjct: 45  NLTVYLDKTKIMVFNNCAKSMNNYRFNYQGNLLKNVTSYKYLGIVFSAIGNFNVAKEEIK 104

Query: 198 RVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQK 34
           ++ +    KMK  + +HY++       L AK T   +    K+  ++  ++ + K
Sbjct: 105 KIALKALYKMKKEMGSHYRDNLKLATRLFAKLTNKSKCRSVKYWLRLISQQNEPK 159


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 210 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 97
           KA ++V +  H   K NL +H+K K+Y P+  R  + R
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107


>SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 156 RNHYKNKKYKPLDLRAKKTRAMRKA---LTKHEAKIKXEERDQKEI 28
           +NH ++KK+  + LRA KT  + +    +TK   KI  E+ ++  +
Sbjct: 52  KNHMQSKKHNEIVLRASKTSLLVRQPGNMTKKVEKIAKEDEEENMV 97


>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 177 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKE 31
           +K K   +   K KK K    + KK +  +K   + E + + EE+++KE
Sbjct: 160 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKE 208


>SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 168 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQK 34
           K+N ++H K KK K        T  +++ L K + K K    D K
Sbjct: 138 KINEKSHVKAKKKKDKSSVPGNTEKLKRHLKKSKEKTKTPTADSK 182


>SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 126 PLDLRAKKTRAMRKALTKHEAKIKXEER 43
           P+  R++KT   RKAL K E   + EER
Sbjct: 484 PITSRSRKTSRSRKALGKVEPNQQSEER 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,807,888
Number of Sequences: 59808
Number of extensions: 149252
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)