Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_C10
(413 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 111 2e-25
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 111 2e-25
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 111 2e-25
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 111 2e-25
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 110 3e-25
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 30 0.71
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 3.8
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 3.8
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 27 5.0
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 5.0
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 27 6.6
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 111 bits (266), Expect = 2e-25
Identities = 60/115 (52%), Positives = 72/115 (62%)
Frame = -3
Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 184
M ++K ELR K L LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 183 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKEISLP 19
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +K E +KE+ P
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 111 bits (266), Expect = 2e-25
Identities = 59/115 (51%), Positives = 73/115 (63%)
Frame = -3
Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 184
M ++K ELR K L +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 183 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKEISLP 19
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +K E +K++ P
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFP 115
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 111 bits (266), Expect = 2e-25
Identities = 59/115 (51%), Positives = 73/115 (63%)
Frame = -3
Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 184
M ++K ELR K L +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 183 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKEISLP 19
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +K E +K++ P
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFP 115
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 111 bits (266), Expect = 2e-25
Identities = 60/115 (52%), Positives = 72/115 (62%)
Frame = -3
Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 184
M ++K ELR K L LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 183 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKEISLP 19
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +K E +KE+ P
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 110 bits (265), Expect = 3e-25
Identities = 60/115 (52%), Positives = 72/115 (62%)
Frame = -3
Query: 363 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 184
M ++K ELR K L LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 183 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDQKEISLP 19
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +K E +KE+ P
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 29.9 bits (64), Expect = 0.71
Identities = 17/75 (22%), Positives = 37/75 (49%)
Frame = -3
Query: 240 SKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 61
S SK+R + K + ++ K RN K+ + +DL+ + A + L ++A
Sbjct: 73 SASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAG 132
Query: 60 IKXEERDQKEISLPT 16
+K + + +++S P+
Sbjct: 133 LKRKHVEMEDLSSPS 147
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 279 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 133
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 279 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 133
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 135 KYKPLDLRAKKTRAMRKALTKHEAK 61
KY+P D AKK R ++KA + E K
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGK 117
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 180 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEER 43
H + K+ RN NKK+ ++ + A K + + E I+ EE+
Sbjct: 420 HSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEK 465
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 135 KYKPLDLRAKKTRAMRKALTKHEAK 61
KY+P D AKK R + KA + E K
Sbjct: 92 KYRPEDKAAKKERLLNKAQAEAEGK 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,824,320
Number of Sequences: 28952
Number of extensions: 102069
Number of successful extensions: 243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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