Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_C09
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856... 146 2e-35
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 56 2e-08
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 29 3.1
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 29 5.4
08_01_0588 + 5222536-5222656,5222887-5223440 28 7.2
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 28 9.5
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 9.5
>03_01_0008 +
84955-85048,85165-85225,85375-85426,85554-85661,
85662-85715,86140-86190,86348-86410,87048-87113,
87190-87228,87493-87615,88251-88343,88437-88661
Length = 342
Score = 146 bits (354), Expect = 2e-35
Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 2/207 (0%)
Frame = -1
Query: 681 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 502
+LSNG+N++G SQG RAVV+ C P +KN +SLGG H G +P CG+ C
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167
Query: 501 DVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTV--NKTYIQNL 328
L+ Y+ +VQ L + Y P D Y FL +NN N TY +
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDYLKGCRFLPKLNNELPGERNATYKERF 227
Query: 327 NNLERFVLVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKAGK 148
++LE VL+MF +D+++ P+ET WFG+Y G + ++ +++K+Y++D +GLK +D G+
Sbjct: 228 SSLENLVLIMFQDDAVLIPRETAWFGYYPDGGFDPVLPPQKTKLYMEDWIGLKTLDDEGR 287
Query: 147 LIFLSTPGDHLRFTEEWMIKNIIKPYL 67
+ F+S PG HL ++ M+K I+ PYL
Sbjct: 288 VKFVSVPGGHLGISKTDMMKYIV-PYL 313
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/103 (32%), Positives = 53/103 (51%)
Frame = -1
Query: 726 NLQVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGI 547
NL Y+C + +L G++++G SQG RAV++ C P +KN +S+GG H G
Sbjct: 100 NLHHFYLCT-VKKMKELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPVKNFISIGGPHAGT 157
Query: 546 YGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDP 418
+P CG+ C + L+ Y+++VQ L + Y P
Sbjct: 158 ASVPLCGS--GIVCVLIDALIKLEIYSNYVQAHLAPSGYLKIP 198
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = -1
Query: 204 SKIYLQDRLGLKKMDKAGKLIFLSTPG 124
+K+Y +D +GLK +++AG++ F+S PG
Sbjct: 200 TKLYTEDWIGLKALEEAGRVKFVSVPG 226
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = -1
Query: 702 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 523
E+LA + +L F +MGFS G + + + ++ H+L + + +G G+P
Sbjct: 154 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYWWS--GLP---- 207
Query: 522 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 385
+ + + L + WV + L TYW + ++ + A+SV
Sbjct: 208 -SNMSWHVWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 250
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = -1
Query: 702 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 523
E+LA + +L F +MGFS G + + + ++ H+L + + +G G+P
Sbjct: 121 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYWWS--GLP---- 174
Query: 522 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 385
+ + + L + WV + L TYW + ++ + A+SV
Sbjct: 175 -SNVSWHAWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 217
>08_01_0588 + 5222536-5222656,5222887-5223440
Length = 224
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 626 RIN*HPCEKPMTLNPFDSFGSAANFSHTYST 718
R+N PC+ PM +N D F +AA F ST
Sbjct: 42 RVNGFPCKNPMEVNS-DDFFNAAKFDMPRST 71
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/89 (23%), Positives = 36/89 (40%)
Frame = -1
Query: 522 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKT 343
L+H D++ AY S+ S+ +A HD LD+R A + + + T
Sbjct: 469 LKHNRGDELGVFTPSHAYKSYQDISISRAPEQHDELDKRLLWAELSKTSRLLDDNTTGTN 528
Query: 342 YIQNLNNLERFVLVMFDNDSIVQPKETEW 256
+ +++ L D D + KE W
Sbjct: 529 ELNVVSSQHGEQLNAKDQDELQNIKEKVW 557
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 726 NLQVEYVCEKLAADPKLSNGFNV 658
N++ E KLA +PK+SNG +V
Sbjct: 1606 NMKAEKAAAKLAKEPKISNGVSV 1628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,958
Number of Sequences: 37544
Number of extensions: 408669
Number of successful extensions: 925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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