Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C09
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)         147   8e-36
SB_33940| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_26191| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)                        28   9.7  

>SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)
          Length = 144

 Score =  147 bits (357), Expect = 8e-36
 Identities = 72/146 (49%), Positives = 96/146 (65%), Gaps = 11/146 (7%)
 Frame = -1

Query: 582 NMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERT 403
           N++S GGQHQG+YG PHC       C+ VR+LLN  AY S     LVQA YWHDP++E+ 
Sbjct: 3   NLISFGGQHQGVYGFPHCPGDNSTLCNYVRELLNIGAYVS-----LVQAEYWHDPMNEKE 57

Query: 402 YEANSVFLADINN-----------VRTVNKTYIQNLNNLERFVLVMFDNDSIVQPKETEW 256
           Y   S+FLADIN            ++T N TY +NL  L+ FV+VMF  D++V PKE+EW
Sbjct: 58  YRDKSIFLADINQEKFTLQRLIFVLQTKNPTYKENLMKLKNFVMVMFAKDTMVDPKESEW 117

Query: 255 FGFYAPGQAEKLVSLRESKIYLQDRL 178
           FGFY PGQ ++L++L+ES +Y +  L
Sbjct: 118 FGFYKPGQGKELMTLQESLLYKEVHL 143


>SB_33940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
 Frame = -1

Query: 333 NLNNLERFVLVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKA 154
           N   L+  VL+   +D ++ P ++  FGFY   Q   ++ + +  +YL D  GL+ +DK 
Sbjct: 8   NFLKLKNLVLIGGPDDGVITPWQSSHFGFY--DQDLNVLDMTQQMVYLDDTFGLQTLDKR 65

Query: 153 GKLIFLSTPG-DHLRF-TEEWMIKNIIKPYLS 64
             +   + PG +H+++   E +    IKP+L+
Sbjct: 66  KAVHMYTFPGIEHVKWHGSEQVFDKAIKPWLT 97


>SB_26191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -1

Query: 444 VQATYWHDPLDERTYEANSVFLADINNV-RTVNKTYIQNLNNLERFVLVMFDNDSIVQPK 268
           +Q+ ++H    ER    +SV L   N + RT+ + +     +      ++F  ++I++  
Sbjct: 72  IQSEWYHPYYSERML--SSVLLFRENGIIRTIQREWYHPYYSERMLSSILFRENAIIRTI 129

Query: 267 ETEWFGFYAPGQAEKLVSLRESKIY 193
           + EW+  Y    +E++ +LR  KI+
Sbjct: 130 KREWYHTY---YSERIETLRNRKIH 151


>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 642 GCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETC 505
           GC+ +  ++Q  G+KL ++    +  G  +  Y    C ALRHE C
Sbjct: 669 GCKEVLTLLQNFGNKLTKLDLTFNSIGDEEAKY---ICEALRHENC 711


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 177 RVDPANKS*IPLT-IPISRPVPERKNRTIPSPSAAL 281
           RV   +K  +PLT   +  P PERK+RT P  S A+
Sbjct: 803 RVTGRDKGSLPLTKSKVDAPTPERKSRTQPRDSYAV 838


>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
          Length = 158

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 486 VASSHHHMFRVSRHHNEVCHRCLGADLR 569
           + SSHHH      H +  CH+ +   +R
Sbjct: 108 ITSSHHHHHHHHHHQHRGCHKAVAGHVR 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,327,843
Number of Sequences: 59808
Number of extensions: 492258
Number of successful extensions: 1039
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)