Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C07
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 341  EQSLPPQQHRARSSVSHTYK 282
            +Q LPP   + R +V+H Y+
Sbjct: 1282 QQQLPPSSPQPRLTVNHAYR 1301


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 433 TTAGIPSRSP 462
           TT G+PS+SP
Sbjct: 591 TTGGVPSKSP 600


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 427 DLTGPATPKLSRY 389
           D+T P TP L RY
Sbjct: 823 DITTPPTPNLLRY 835


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 417 VRPLQN*ADMLHFTASLSMHPTCPMRAVPSTTTTSC 310
           VRP +N +  L     LS+H    +       TT+C
Sbjct: 21  VRPAENSSQPLAVVFGLSLHHIIDVDEKNQILTTNC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,013
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)