Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C06
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    28   1.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.8  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    25   8.7  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   8.7  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 714 KEQKPEVCHLLADYLEAIKXDFEKAAKVYKSNCLEYKFGKSCLXIGN 574
           K Q+  + + ++   ++IK   EKA    KSN L+  FGKS   I N
Sbjct: 389 KVQRTHLANDISSEKQSIKSANEKAYVTPKSNSLKPGFGKSLSDISN 435


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 153 EKNQDESKRFFEIAQSLQKAHETTK 79
           EK QD+ K   E  QSLQ+A ET K
Sbjct: 332 EKLQDQIKALLERNQSLQEALETVK 356


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 200 LLVPMSV*CTXKVTELRKTRMNQNDSLKLHRACKRRMKLRKR 75
           L++P       K  E  K    +ND L L +  K+R+K  K+
Sbjct: 79  LIIPPEEMLETKEEESLKHAREENDDLHLDKETKKRLKKEKK 120


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 693 CHLLADYLEAIKXDFEKAAKVY 628
           CH+  D+LEA++   E+  K +
Sbjct: 564 CHIYNDHLEALQTQLERVPKAF 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,622
Number of Sequences: 5004
Number of extensions: 56468
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)