Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C06
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    47   1e-05
03_02_0427 + 8367633-8368205,8369318-8369809,8370602-8370817,837...    29   3.9  
11_04_0145 + 14082864-14082946,14083060-14083267,14083383-140835...    29   5.2  

>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
 Frame = -3

Query: 561 GRGREKGDPAEALIYFEKGCELNDPGACLHAGMLLTATGPGVNIQRDVPKGYNCLKKSCD 382
           G    K +   AL  F++   L    A + AG++    G     +RD   G  C +K+ +
Sbjct: 150 GAEGRKAERQRALGLFQRAARLGSAAAMVDAGLMCWEEG-----RRDEAVG--CYQKAAE 202

Query: 381 QNDDMACHYLSGMYLTGVPXNVQD----FNPHNPXKNKNIDYL----------IKPDKXE 244
               +    L   YL   P   ++    F P     N    Y           IK ++ E
Sbjct: 203 LGHPVGMCNLGVSYLEADPPKAEEAVRWFYPAAAAGNARAQYNLGLCLQNGKGIKRNQRE 262

Query: 243 AFRFAKRACELGNMFACANVSLMYKXGDGVEKNQDESKRFFEIA 112
           A ++  RA E GN+ A  N+SL Y  G+G  ++Q  SKR+ ++A
Sbjct: 263 AAKWYLRAAEGGNVRAMYNISLCYNYGEGFSQDQVRSKRWLQLA 306


>03_02_0427 +
           8367633-8368205,8369318-8369809,8370602-8370817,
           8371914-8372237,8372991-8373233,8374056-8374250
          Length = 680

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = -3

Query: 432 IQRDVPKGYNCLKKSCDQNDDMACHYLSGMYLTGVPXNVQDFNPHNPXKNKNIDYLIKPD 253
           ++RD  K Y+   K+ ++ D  A   L  +Y  G                      ++ +
Sbjct: 276 VRRDYGKAYHWFSKAVEKGDTRAMELLGEIYARGAG--------------------VERN 315

Query: 252 KXEAFRFAKRACELGNMFACANVSLMYKXGDGVE-KNQDESKRFFEIA 112
             EA+++   A +     A   +  +Y  G GVE KN  ++K FFEIA
Sbjct: 316 YTEAYKWLTLAAKQQQYSAYNGLGYLYVKGYGVEKKNLTKAKEFFEIA 363


>11_04_0145 +
           14082864-14082946,14083060-14083267,14083383-14083599,
           14084170-14084276,14085521-14085674,14086848-14087029
          Length = 316

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 492 DPGACLHAGMLLTATGPGVN-IQRDVPKGYNCLKKSCDQ 379
           D G C +  M  +      N IQRD  KGY C  K  DQ
Sbjct: 254 DGGHCKNENMFYSRVDVHANLIQRDFMKGYTCWVKHGDQ 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,184,292
Number of Sequences: 37544
Number of extensions: 351839
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)