Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C06
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat...    35   0.066
At1g70590.1 68414.m08131 F-box family protein contains Pfam PF00...    31   1.1  
At1g73570.1 68414.m08517 suppressor of lin-12-like protein-relat...    30   1.9  
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m...    27   10.0 
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    27   10.0 

>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 678

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = -3

Query: 582 IGNYTXIGRGREKGDPAEALIYFEKGCELNDPGACLHAGMLLTATGPGVNIQRDVPKGYN 403
           IG     G G +K +  +A  YFEK  +  DP    + G+L      G+ + RDV +   
Sbjct: 321 IGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYL---KGIGVNRDVRQATK 377

Query: 402 CLKKSCDQNDDMACHYLSGMYLTGV 328
               + +     A + L+ M+ TGV
Sbjct: 378 YFFVAANAGQPKAFYQLAKMFHTGV 402


>At1g70590.1 68414.m08131 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 351

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = -3

Query: 267 LIKPDKXEAFRFAKRACELGNMFACANVSLMYKXGDGVEKNQDESKRFFEIA 112
           +++ +  EA ++  +A E G + A  N+SL Y  G+G+ +N+  ++++ + A
Sbjct: 223 VVQTNLLEATKWYLKAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRA 274


>At1g73570.1 68414.m08517 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 604

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 13/147 (8%)
 Frame = -3

Query: 561 GRGREKGDPAEALIYFEKGCELNDPGACLHAGMLLTATGPGVNIQRDVPKGYNCLKKSCD 382
           G G +K +  +A  YFE      DP    + G+L      G  +++DV         + +
Sbjct: 286 GYGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYL---KGTGVKKDVRHATKYFFVAAN 342

Query: 381 QNDDMACHYLSGMYLTGVPXN------------VQDFNPHNPXKNKNIDYLIKPDKXEAF 238
                A + L+ M+ TGV               V +  P +      ++  +K D  +AF
Sbjct: 343 AGQPKAFYQLAKMFHTGVGLTKNLEMATTFYKLVAERGPWSSLSRWALEAYLKGDVGKAF 402

Query: 237 RFAKRACELGNMFACANVS-LMYKXGD 160
               R  ELG   A +N + ++ K G+
Sbjct: 403 ILYSRMSELGYEVAQSNAAWIVDKYGE 429


>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
           melanogaster, EMBL:AE003739
          Length = 549

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 744 IGIEYRFGCYKEQKPEVCHL 685
           IG ++RFGC++     +CH+
Sbjct: 280 IGDDFRFGCWRSYHSSLCHV 299


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 98  FCKLCAISKNRFDSSWFFSTPSPXLYIKLTLAQANIL 208
           +C L  I+KN+F +  +FS PS  L+  L +A   ++
Sbjct: 217 YCDLIGIAKNKFQTIPYFSYPS-TLFFFLEMALMKVM 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,112,903
Number of Sequences: 28952
Number of extensions: 288674
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)