Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C05
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   167   5e-42
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   167   5e-42
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   165   2e-41
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   165   2e-41
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    55   2e-08
At1g20530.1 68414.m02558 hypothetical protein                          30   0.97 
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   5.2  
At3g18310.1 68416.m02330 expressed protein                             27   6.9  
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2...    27   9.1  
At5g27220.1 68418.m03247 protein transport protein-related low s...    27   9.1  

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  167 bits (405), Expect = 5e-42
 Identities = 73/103 (70%), Positives = 91/103 (88%)
 Frame = -3

Query: 329 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 150
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 149 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVE
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  167 bits (405), Expect = 5e-42
 Identities = 73/103 (70%), Positives = 91/103 (88%)
 Frame = -3

Query: 329 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 150
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 149 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVE
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  165 bits (400), Expect = 2e-41
 Identities = 72/97 (74%), Positives = 88/97 (90%)
 Frame = -3

Query: 311 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 132
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 131 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           WDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVE
Sbjct: 82  WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  165 bits (400), Expect = 2e-41
 Identities = 72/97 (74%), Positives = 88/97 (90%)
 Frame = -3

Query: 311 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 132
           IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22  IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81

Query: 131 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           WDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVE
Sbjct: 82  WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = -3

Query: 368 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 189
           A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    +  GPV +P
Sbjct: 73  ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132

Query: 188 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVE 21
           TK       K+P       +  F++R H+R+ID L+  ++ +  +  +++  GV+VE
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVE 188


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 89  GRSLSCGFASENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSW 232
           G   +C   S + P SLNL+H  FY   Y    +     P   ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 397 ISAGIQQATWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRRS 254
           +SAG ++ T  P+   AKT+  P   SP    S  LL L++ A S  S
Sbjct: 406 LSAGKKKTTSSPVSSSAKTTSTPVSSSP--DTSSFLLSLSLAADSSSS 451


>At3g18310.1 68416.m02330 expressed protein
          Length = 873

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 237 WSQETEAACKGPSPHANQDPA 175
           W+ +++  C GPSP   +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420


>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
           HD-ZIP protein 2 identical to homeobox-leucine zipper
           protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
           SP:P46601; contains Pfam profiles PF04618: HD-ZIP
           protein N terminus, PF02183: Homeobox associated leucine
           zipper,  PF00046: Homeobox domain
          Length = 283

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 77  RESVGRSLSCGFASENDPRSLNLH 148
           +E +G SLS GF+  ++P  +NL+
Sbjct: 5   KEDLGLSLSLGFSQNHNPLQMNLN 28


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 276 IARSKSDPDAVNRGDLCL 329
           +A +K DPD+V RG +CL
Sbjct: 698 MAVTKLDPDSVRRGSICL 715


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,107,194
Number of Sequences: 28952
Number of extensions: 234738
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)