Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C02
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N000 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_Q7RLE6 Cluster: Protein phosphatase-1 regulatory subuni...    34   3.9  
UniRef50_Q4UCD7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q4UH92 Cluster: Integral membrane protein, putative; n=...    33   6.9  

>UniRef50_Q4N000 Cluster: Putative uncharacterized protein; n=1;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1153

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +1

Query: 100 YIYLTNITRWYILNNINVHSMVCTTVTHIFLKINTLDI*NITFK*--NKIYSFSMPGMLN 273
           Y+  TN+    I+ N+N    +C    +I LK+N +D  N+ +K   NKI+S ++ GM+ 
Sbjct: 186 YLLTTNVLNINIIGNVNFLYSLC----YIHLKLNVIDN-NLIYKGTRNKIFSHTLDGMIT 240

Query: 274 KMNKN 288
           K   N
Sbjct: 241 KCVDN 245


>UniRef50_Q7RLE6 Cluster: Protein phosphatase-1 regulatory subunit 7
           alpha2; n=5; Plasmodium (Vinckeia)|Rep: Protein
           phosphatase-1 regulatory subunit 7 alpha2 - Plasmodium
           yoelii yoelii
          Length = 1231

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 215 YMSNVLIFKKMCVTVVQTIECTFILFKIYHLVILVKYM*LSRYFCDFFVI--ILNFI 51
           Y+ N  I KK C+   Q I C+ + F +Y+L+ L++Y+ +  Y  DF  I  +L+F+
Sbjct: 2   YLYNERI-KKECLNTNQKINCSDLNF-VYNLITLIRYIIIYNYDKDFLQIFDVLSFL 56


>UniRef50_Q4UCD7 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 189

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 79  SQKYL-LNYIYLTNITRWYILNNINVHSMVCTTVTHIFLKIN 201
           S KY+ LN+IY+ NI +  I NNIN ++M+     + F +IN
Sbjct: 3   SLKYIYLNFIYIPNINKNNINNNINKNNMISRMSLNNFPEIN 44


>UniRef50_Q4UH92 Cluster: Integral membrane protein, putative; n=1;
           Theileria annulata|Rep: Integral membrane protein,
           putative - Theileria annulata
          Length = 472

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 23/64 (35%), Positives = 37/64 (57%)
 Frame = -1

Query: 242 ILFYLNVMFYMSNVLIFKKMCVTVVQTIECTFILFKIYHLVILVKYM*LSRYFCDFFVII 63
           +L  ++ ++Y+S    + K+  T++  I  + IL  +Y L+I  KY  L  +F   FVII
Sbjct: 19  LLLPIHYLYYISYNFFYIKLS-TIITII--SIILGSMYLLIISPKY--LLTHFNKLFVII 73

Query: 62  LNFI 51
           LNFI
Sbjct: 74  LNFI 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,291,210
Number of Sequences: 1657284
Number of extensions: 9008424
Number of successful extensions: 17919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17913
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)