BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_pT_C02 (707 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 29 0.86 SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 27 2.0 SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.1 SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 8.0 SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 8.0 SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 25 8.0 >SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosaccharomyces pombe|chr 1|||Manual Length = 851 Score = 28.7 bits (61), Expect = 0.86 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 336 NTNKIIKVKFNFNRTKIEMY*VTYIKSWLCQSLCLNF 446 N+++++ ++FN TK E Y Y+ S LNF Sbjct: 452 NSSRVLNSDYSFNHTKYESYSPLYMPMSYSMSTALNF 488 >SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 697 Score = 27.5 bits (58), Expect = 2.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 197 LIHWTYKTLHLNKTKFIHF 253 LI+W Y HL KT +HF Sbjct: 391 LINWLYSNFHLPKTVSLHF 409 >SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 25.8 bits (54), Expect = 6.1 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 310 GIVMYLIYFCSFCLTFQAL 254 G+ YLIYFC +C F AL Sbjct: 48 GVKRYLIYFC-YCANFIAL 65 >SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1336 Score = 25.4 bits (53), Expect = 8.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 153 TFNGLYNRHTHFFK 194 +F+ L NRHTHF+K Sbjct: 1314 SFDELMNRHTHFWK 1327 >SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 457 Score = 25.4 bits (53), Expect = 8.0 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -1 Query: 170 VQTIECTFILFKIYHLVILVKYM*LSRYFCDFFV 69 + I C F LF + I ++ + L +FC FF+ Sbjct: 285 IPLIICFFALFVVRFFAITIQSIHLGLWFCFFFL 318 >SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 431 Score = 25.4 bits (53), Expect = 8.0 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 469 RYGKQFYKIKS*NVIYVIKNTIDNILIDNTEK 564 RYG++F++I I IKN D++++ T + Sbjct: 295 RYGQEFHQIMGDTDIQSIKNEGDHLVVQLTSQ 326 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,469,037 Number of Sequences: 5004 Number of extensions: 42512 Number of successful extensions: 87 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 87 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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