Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C02
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    29   0.86 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.0  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.0  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   8.0  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   8.0  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 336 NTNKIIKVKFNFNRTKIEMY*VTYIKSWLCQSLCLNF 446
           N+++++   ++FN TK E Y   Y+      S  LNF
Sbjct: 452 NSSRVLNSDYSFNHTKYESYSPLYMPMSYSMSTALNF 488


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 197 LIHWTYKTLHLNKTKFIHF 253
           LI+W Y   HL KT  +HF
Sbjct: 391 LINWLYSNFHLPKTVSLHF 409


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 310 GIVMYLIYFCSFCLTFQAL 254
           G+  YLIYFC +C  F AL
Sbjct: 48  GVKRYLIYFC-YCANFIAL 65


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 153  TFNGLYNRHTHFFK 194
            +F+ L NRHTHF+K
Sbjct: 1314 SFDELMNRHTHFWK 1327


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 170 VQTIECTFILFKIYHLVILVKYM*LSRYFCDFFV 69
           +  I C F LF +    I ++ + L  +FC FF+
Sbjct: 285 IPLIICFFALFVVRFFAITIQSIHLGLWFCFFFL 318


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 RYGKQFYKIKS*NVIYVIKNTIDNILIDNTEK 564
           RYG++F++I     I  IKN  D++++  T +
Sbjct: 295 RYGQEFHQIMGDTDIQSIKNEGDHLVVQLTSQ 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,037
Number of Sequences: 5004
Number of extensions: 42512
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)