Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C02
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915...    27   2.5  

>10_08_0791 -
           20590744-20591211,20591379-20591439,20591525-20591592,
           20592015-20592188,20592291-20592331,20592571-20592620,
           20593083-20593171,20593250-20593324,20593631-20593719,
           20593895-20593955,20594111-20594227,20594465-20594667,
           20594785-20594842,20594951-20595103
          Length = 568

 Score = 26.6 bits (56), Expect(2) = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 236 FYLNVMFYMSNVLIFKKMCVTVVQTIECTFILFKIYHLV 120
           F L   F+ +  LI  ++C+ VV    C++I   +Y LV
Sbjct: 373 FGLRSCFHDNFELIIARVCLGVVVQFMCSYITLPLYALV 411



 Score = 21.4 bits (43), Expect(2) = 2.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 392 HFYFGPIEIKFHLNNFIS 339
           HF+FG   +  HL +F S
Sbjct: 351 HFWFGKPRLVLHLIHFAS 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,710
Number of Sequences: 37544
Number of extensions: 204426
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)