Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C02
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    28   5.7  
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    27   9.9  
AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 534 NGVFDYVNHILRFNFIKLFSISGQERGLFKNSDTMIGTAMT*YRLLNTFLFWSY 373
           N VF     I  FN I +F ++  ER  F N        +  Y LL++FLF+SY
Sbjct: 23  NFVFGIFGVICNFNIISIF-LTSTERTSF-NLICFSRAFVNFYILLSSFLFYSY 74


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -1

Query: 215 YMSNVLIFKKMCVTVVQTIECTFILFKIYHLVILVKYM*LSRYFCDFFVIILNF 54
           +++N+ +    C+T+         L   +HL  ++KY+   R   D + +I  F
Sbjct: 25  WLANMSVMHVSCLTIACVFVAITFLSSFFHLFFVLKYVSNERIRNDMYALIFMF 78


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 676 FRDTLRAGHLHICGLMLNTSIY 611
           F+ T   G LH CG   N S+Y
Sbjct: 476 FKSTREGGSLHCCGAFKNISVY 497


>AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical
           protein Y23H5B.1 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 4   ISLCFLCQTCIDIFQ*IKFKMITKKSQKYLLNYIYLTNITRWYILNNINVHSMVCTTVTH 183
           +SL + CQ   D +  ++    T K  K L+N++    +    ILN       +CT   +
Sbjct: 57  LSLLYKCQEATDCYMKLEQLHPTSKEIKKLVNFVERNQVPICQILNFNTGEFAICTEKEN 116

Query: 184 I 186
           I
Sbjct: 117 I 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,847
Number of Sequences: 27780
Number of extensions: 236021
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)