Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C02
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 602 VLLINRGVEH*AAYMQVTCSKRVSKNXRFH 691
           VL+I   + +    + +TC KRVSK+ R H
Sbjct: 46  VLMIISAIGNTTVLILITCRKRVSKS-RIH 74


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 98  LSRYFCDFFVIILNFIY 48
           +SR+F  F  +ILN +Y
Sbjct: 362 VSRFFFPFSFLILNVVY 378


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 237 VLFKCNVLYVQCINL 193
           +L  C  +YVQ INL
Sbjct: 179 ILGSCKCIYVQSINL 193


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 85  KYLLNYIYLTNITRWYILNNINVH 156
           KYLL  + L  ++ W  +  +NVH
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNVH 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,330
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)