Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_C01
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    27   9.7  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 252  NRYDQCRQS--RILNIKLYIIIFSNISL 329
            N +DQ R    R+L+ K+ +I+FSNI L
Sbjct: 3178 NLFDQSRDGIMRVLSFKIAMIVFSNIPL 3205


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 252  NRYDQCRQS--RILNIKLYIIIFSNISL 329
            N +DQ R    R+L+ K+ +I+FSNI L
Sbjct: 3178 NLFDQSRDGIMRVLSFKIAMIVFSNIPL 3205


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 252  NRYDQCRQS--RILNIKLYIIIFSNISL 329
            N +DQ R    R+L+ K+ +I+FSNI L
Sbjct: 3178 NLFDQSRDGIMRVLSFKIAMIVFSNIPL 3205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,049
Number of Sequences: 27780
Number of extensions: 250611
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)