Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_B24
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.6  
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    21   8.7  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   8.7  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    21   8.7  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +3

Query: 384  SSNHARVDTMLTYAELPH*VVITSWVVAPSPAQFRYNYT*NGDGTTSPKWVS 539
            +  + R    L Y E+ H +    W V   P +    Y   GD     +WVS
Sbjct: 1667 AGEYTRAAGFLAYYEICHNIKTQGWTVVQDPNRRMGPYAYKGD-----QWVS 1713


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 597 MPKAKLHRPRRMPRNEQTAWRPILG*SY 514
           MP   +H P   P   Q A + I+G  Y
Sbjct: 452 MPSQYIHEPWTAPEQVQRAAKCIIGKDY 479


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 560 QEMNKPPGDP 531
           Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 1   MQIFVKTLTGKTIT 14


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 1   MQIFVKTLTGKTIT 14



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 77  MQIFVKTLTGKTIT 90



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 153 MQIFVKTLTGKTIT 166



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 229 MQIFVKTLTGKTIT 242



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 305 MQIFVKTLTGKTIT 318



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 381 MQIFVKTLTGKTIT 394



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 457 MQIFVKTLTGKTIT 470



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 533 MQIFVKTLTGKTIT 546



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 609 MQIFVKTLTGKTIT 622


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 1   MQIFVKTLTGKTIT 14


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 MNKFADTLTGRTIT 360
           M  F  TLTG+TIT
Sbjct: 49  MQIFVKTLTGKTIT 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,878
Number of Sequences: 336
Number of extensions: 3034
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)