Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_B23
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 114 6e-26
SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029) 75 4e-14
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 30 2.1
SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 29 3.7
SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8) 29 3.7
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 28 6.4
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 114 bits (275), Expect = 6e-26
Identities = 49/107 (45%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Frame = -3
Query: 704 KVFQNLDSVVDDN-TIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPAP 528
KVFQNL++ + + I +E L+ + + IV+HP+NPPYYVPLVE++PAP
Sbjct: 12 KVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPYYVPLVEVIPAP 71
Query: 527 WTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 387
WT V ++T ++M++IGQ PV L +E +GF++NR+QYA++ E WRL
Sbjct: 72 WTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRL 118
>SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029)
Length = 107
Score = 75.4 bits (177), Expect = 4e-14
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = -3
Query: 344 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYR-VSNEMGPAPRMTTNKSRNSVC 168
M+EGLG+RY+ +G ET HLNA+G++ Y RYG+ I+ V N P+P T + ++V
Sbjct: 13 MTEGLGLRYSLIGPFETMHLNADGIRDYCQRYGDNIHHIVKNSTIPSP--LTGATLDTVE 70
Query: 167 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 72
E L + +P++KL DRR RD L L++ + +
Sbjct: 71 EDLCQTMPLDKLSDRRALRDRRLAALAVFRAQ 102
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 153 LLQLFAHRVSAFICRHTRSRSHFIADTINCLSVSINITLHAFSIQMGCF*STQKCISHSK 332
++QL H + R+T H I T+ CLS+ + + F I+M C + C S+
Sbjct: 68 VVQLLTHGLQKTHLRYTIDNLHQIMVTLCCLSLDLRLQSIMFDIEM-CILALLDCFGESQ 126
>SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 153 LLQLFAHRVSAFICRHTRSRSHFIADTINCLSVSINITLHAFSIQMGCF*STQKCISHSK 332
++QL H + R+T H I T+ CLS+ + + F I+M C + C S+
Sbjct: 68 VVQLLTHGLQKTHLRYTIDNLHQIMVTLCCLSLDLRLQSIMFDIEM-CILALLDCFGESQ 126
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/73 (20%), Positives = 30/73 (41%)
Frame = -3
Query: 701 VFQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWT 522
VF+++ N + +E + + + + + P Y +P VEI T
Sbjct: 100 VFKSISQFCRTNAVIATNTLALDTSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQT 159
Query: 521 KPEVAKKTREIME 483
PE +K ++ +E
Sbjct: 160 SPETIQKVQQFLE 172
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 614 GLKHKSQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVAKKTREIMEEIGQQPVS 459
G+ + +V P P P+ +VP+P T+PEV T +E+ Q S
Sbjct: 193 GMPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQQPSQQYS 245
>SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8)
Length = 116
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = -3
Query: 206 PRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKK 75
P + + R+++C++LEK + E+ + R +R+L L+ LLK+
Sbjct: 70 PTSASQRRRSAICDELEKRIYCEQGANLRKFREL-LVTQRLLKE 112
>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
Length = 396
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -2
Query: 246 RDNLSCQQ*NGTGSA 202
RDNLSC++ NGTG+A
Sbjct: 317 RDNLSCRRRNGTGAA 331
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 530 PWTKPEVAKKTREIMEEIGQQPVSLTREID 441
PW + R++ + IG+ P +L REID
Sbjct: 1831 PWLSSAEERLARKMAQPIGRDPSTLRREID 1860
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,441,366
Number of Sequences: 59808
Number of extensions: 437786
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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